miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24662 3' -53.8 NC_005264.1 + 35136 0.65 0.973802
Target:  5'- uGACGgGAuucuuccccggccuGGCCGCGGUgugUCUgGUGGg -3'
miRNA:   3'- -CUGCgCU--------------CUGGCGCCAag-AGAgUAUC- -5'
24662 3' -53.8 NC_005264.1 + 31199 0.66 0.971882
Target:  5'- gGACGgGGGGCUGCGGccCUC-CAgagAGa -3'
miRNA:   3'- -CUGCgCUCUGGCGCCaaGAGaGUa--UC- -5'
24662 3' -53.8 NC_005264.1 + 150226 0.66 0.971882
Target:  5'- gGACGgGGGGCUGCGGccCUC-CAgagAGa -3'
miRNA:   3'- -CUGCgCUCUGGCGCCaaGAGaGUa--UC- -5'
24662 3' -53.8 NC_005264.1 + 86353 0.66 0.958939
Target:  5'- cGAUGCGAGacGCCGCuuauaugUCUgUCAUGGa -3'
miRNA:   3'- -CUGCGCUC--UGGCGcca----AGAgAGUAUC- -5'
24662 3' -53.8 NC_005264.1 + 36937 0.66 0.958939
Target:  5'- --aGCG-GGCCGCGGUUCUUaCGc-- -3'
miRNA:   3'- cugCGCuCUGGCGCCAAGAGaGUauc -5'
24662 3' -53.8 NC_005264.1 + 86592 0.67 0.955152
Target:  5'- uGCGUGAGACaCGCGGUcgUCgcgcCUCGc-- -3'
miRNA:   3'- cUGCGCUCUG-GCGCCA--AGa---GAGUauc -5'
24662 3' -53.8 NC_005264.1 + 45619 0.67 0.951136
Target:  5'- -cCGCaGAGGCCGCGGUaaguaUCgUUCAUGa -3'
miRNA:   3'- cuGCG-CUCUGGCGCCA-----AGaGAGUAUc -5'
24662 3' -53.8 NC_005264.1 + 157316 0.67 0.946885
Target:  5'- cGCGCGAGacGCCGCGG--CUgUCAUcAGg -3'
miRNA:   3'- cUGCGCUC--UGGCGCCaaGAgAGUA-UC- -5'
24662 3' -53.8 NC_005264.1 + 117251 0.67 0.946447
Target:  5'- cGAUGCggagaacGAGACCGCGG---UCUCGUGc -3'
miRNA:   3'- -CUGCG-------CUCUGGCGCCaagAGAGUAUc -5'
24662 3' -53.8 NC_005264.1 + 76246 0.68 0.932704
Target:  5'- aGGCGCGAcGACCGCG--UgUCUCAc-- -3'
miRNA:   3'- -CUGCGCU-CUGGCGCcaAgAGAGUauc -5'
24662 3' -53.8 NC_005264.1 + 83123 0.68 0.927494
Target:  5'- gGGCGCcaAGGCCGCGGaggcgcgUCUgccCUCAUGGu -3'
miRNA:   3'- -CUGCGc-UCUGGCGCCa------AGA---GAGUAUC- -5'
24662 3' -53.8 NC_005264.1 + 99192 0.68 0.92696
Target:  5'- aGACGUGGGGuccucgcaggccuCCGCGGccgcUUCUCUCGc-- -3'
miRNA:   3'- -CUGCGCUCU-------------GGCGCC----AAGAGAGUauc -5'
24662 3' -53.8 NC_005264.1 + 17682 0.69 0.891178
Target:  5'- aGGCGCagccGAGGCCGCGGcgg-CUCGUGu -3'
miRNA:   3'- -CUGCG----CUCUGGCGCCaagaGAGUAUc -5'
24662 3' -53.8 NC_005264.1 + 127362 0.69 0.8843
Target:  5'- -uCGCGAucGGCCGCGGcaCUCUCGc-- -3'
miRNA:   3'- cuGCGCU--CUGGCGCCaaGAGAGUauc -5'
24662 3' -53.8 NC_005264.1 + 103811 0.69 0.86987
Target:  5'- --gGCGGGACCGCGGggCUugcgCUCGa-- -3'
miRNA:   3'- cugCGCUCUGGCGCCaaGA----GAGUauc -5'
24662 3' -53.8 NC_005264.1 + 45581 0.7 0.846617
Target:  5'- uGGCaCGAGACCGCGGUcucguUCUCcgCAUc- -3'
miRNA:   3'- -CUGcGCUCUGGCGCCA-----AGAGa-GUAuc -5'
24662 3' -53.8 NC_005264.1 + 24974 0.7 0.830117
Target:  5'- -cCGCGAGACCuGCGGUUgUCccCGUAc -3'
miRNA:   3'- cuGCGCUCUGG-CGCCAAgAGa-GUAUc -5'
24662 3' -53.8 NC_005264.1 + 142967 0.7 0.830117
Target:  5'- --aGCGcGGCCGCGGcggUCUCUCGg-- -3'
miRNA:   3'- cugCGCuCUGGCGCCa--AGAGAGUauc -5'
24662 3' -53.8 NC_005264.1 + 79408 0.71 0.804913
Target:  5'- cGugGCGAGGCCGCGGcggaacccagCGUGGg -3'
miRNA:   3'- -CugCGCUCUGGCGCCaagaga----GUAUC- -5'
24662 3' -53.8 NC_005264.1 + 133324 0.72 0.747804
Target:  5'- gGugGCGAGAUgGCGGgUCUUUCGc-- -3'
miRNA:   3'- -CugCGCUCUGgCGCCaAGAGAGUauc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.