Results 1 - 20 of 22 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24662 | 3' | -53.8 | NC_005264.1 | + | 35136 | 0.65 | 0.973802 |
Target: 5'- uGACGgGAuucuuccccggccuGGCCGCGGUgugUCUgGUGGg -3' miRNA: 3'- -CUGCgCU--------------CUGGCGCCAag-AGAgUAUC- -5' |
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24662 | 3' | -53.8 | NC_005264.1 | + | 99905 | 1.1 | 0.004787 |
Target: 5'- cGACGCGAGACCGCGGUUCUCUCAUAGa -3' miRNA: 3'- -CUGCGCUCUGGCGCCAAGAGAGUAUC- -5' |
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24662 | 3' | -53.8 | NC_005264.1 | + | 133324 | 0.72 | 0.747804 |
Target: 5'- gGugGCGAGAUgGCGGgUCUUUCGc-- -3' miRNA: 3'- -CugCGCUCUGgCGCCaAGAGAGUauc -5' |
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24662 | 3' | -53.8 | NC_005264.1 | + | 24974 | 0.7 | 0.830117 |
Target: 5'- -cCGCGAGACCuGCGGUUgUCccCGUAc -3' miRNA: 3'- cuGCGCUCUGG-CGCCAAgAGa-GUAUc -5' |
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24662 | 3' | -53.8 | NC_005264.1 | + | 17682 | 0.69 | 0.891178 |
Target: 5'- aGGCGCagccGAGGCCGCGGcgg-CUCGUGu -3' miRNA: 3'- -CUGCG----CUCUGGCGCCaagaGAGUAUc -5' |
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24662 | 3' | -53.8 | NC_005264.1 | + | 76246 | 0.68 | 0.932704 |
Target: 5'- aGGCGCGAcGACCGCG--UgUCUCAc-- -3' miRNA: 3'- -CUGCGCU-CUGGCGCcaAgAGAGUauc -5' |
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24662 | 3' | -53.8 | NC_005264.1 | + | 117251 | 0.67 | 0.946447 |
Target: 5'- cGAUGCggagaacGAGACCGCGG---UCUCGUGc -3' miRNA: 3'- -CUGCG-------CUCUGGCGCCaagAGAGUAUc -5' |
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24662 | 3' | -53.8 | NC_005264.1 | + | 45619 | 0.67 | 0.951136 |
Target: 5'- -cCGCaGAGGCCGCGGUaaguaUCgUUCAUGa -3' miRNA: 3'- cuGCG-CUCUGGCGCCA-----AGaGAGUAUc -5' |
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24662 | 3' | -53.8 | NC_005264.1 | + | 36937 | 0.66 | 0.958939 |
Target: 5'- --aGCG-GGCCGCGGUUCUUaCGc-- -3' miRNA: 3'- cugCGCuCUGGCGCCAAGAGaGUauc -5' |
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24662 | 3' | -53.8 | NC_005264.1 | + | 150226 | 0.66 | 0.971882 |
Target: 5'- gGACGgGGGGCUGCGGccCUC-CAgagAGa -3' miRNA: 3'- -CUGCgCUCUGGCGCCaaGAGaGUa--UC- -5' |
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24662 | 3' | -53.8 | NC_005264.1 | + | 142967 | 0.7 | 0.830117 |
Target: 5'- --aGCGcGGCCGCGGcggUCUCUCGg-- -3' miRNA: 3'- cugCGCuCUGGCGCCa--AGAGAGUauc -5' |
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24662 | 3' | -53.8 | NC_005264.1 | + | 86353 | 0.66 | 0.958939 |
Target: 5'- cGAUGCGAGacGCCGCuuauaugUCUgUCAUGGa -3' miRNA: 3'- -CUGCGCUC--UGGCGcca----AGAgAGUAUC- -5' |
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24662 | 3' | -53.8 | NC_005264.1 | + | 86592 | 0.67 | 0.955152 |
Target: 5'- uGCGUGAGACaCGCGGUcgUCgcgcCUCGc-- -3' miRNA: 3'- cUGCGCUCUG-GCGCCA--AGa---GAGUauc -5' |
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24662 | 3' | -53.8 | NC_005264.1 | + | 157316 | 0.67 | 0.946885 |
Target: 5'- cGCGCGAGacGCCGCGG--CUgUCAUcAGg -3' miRNA: 3'- cUGCGCUC--UGGCGCCaaGAgAGUA-UC- -5' |
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24662 | 3' | -53.8 | NC_005264.1 | + | 83123 | 0.68 | 0.927494 |
Target: 5'- gGGCGCcaAGGCCGCGGaggcgcgUCUgccCUCAUGGu -3' miRNA: 3'- -CUGCGc-UCUGGCGCCa------AGA---GAGUAUC- -5' |
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24662 | 3' | -53.8 | NC_005264.1 | + | 99192 | 0.68 | 0.92696 |
Target: 5'- aGACGUGGGGuccucgcaggccuCCGCGGccgcUUCUCUCGc-- -3' miRNA: 3'- -CUGCGCUCU-------------GGCGCC----AAGAGAGUauc -5' |
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24662 | 3' | -53.8 | NC_005264.1 | + | 127362 | 0.69 | 0.8843 |
Target: 5'- -uCGCGAucGGCCGCGGcaCUCUCGc-- -3' miRNA: 3'- cuGCGCU--CUGGCGCCaaGAGAGUauc -5' |
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24662 | 3' | -53.8 | NC_005264.1 | + | 103811 | 0.69 | 0.86987 |
Target: 5'- --gGCGGGACCGCGGggCUugcgCUCGa-- -3' miRNA: 3'- cugCGCUCUGGCGCCaaGA----GAGUauc -5' |
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24662 | 3' | -53.8 | NC_005264.1 | + | 45581 | 0.7 | 0.846617 |
Target: 5'- uGGCaCGAGACCGCGGUcucguUCUCcgCAUc- -3' miRNA: 3'- -CUGcGCUCUGGCGCCA-----AGAGa-GUAuc -5' |
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24662 | 3' | -53.8 | NC_005264.1 | + | 64949 | 0.77 | 0.49528 |
Target: 5'- -uCGCGAGGCCGCGGaaUUCUCUgAcUAGa -3' miRNA: 3'- cuGCGCUCUGGCGCC--AAGAGAgU-AUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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