miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24662 5' -52.7 NC_005264.1 + 131968 0.66 0.979606
Target:  5'- -aCUACAGgUGGGCuCGCGAcgacaggccGGUGgCGGu -3'
miRNA:   3'- uaGAUGUCgACUUG-GCGCU---------UCAC-GCU- -5'
24662 5' -52.7 NC_005264.1 + 102975 0.66 0.979606
Target:  5'- uGUCUcucGCGGgUucgcGAACCGCGA-GUGCGu -3'
miRNA:   3'- -UAGA---UGUCgA----CUUGGCGCUuCACGCu -5'
24662 5' -52.7 NC_005264.1 + 45768 0.66 0.977234
Target:  5'- -cCUGC-GCgGGGCgCGCGGAGUGgGGa -3'
miRNA:   3'- uaGAUGuCGaCUUG-GCGCUUCACgCU- -5'
24662 5' -52.7 NC_005264.1 + 71816 0.66 0.977234
Target:  5'- ---aGCGGCcGAAgccgcCCGCGggGUcGCGAa -3'
miRNA:   3'- uagaUGUCGaCUU-----GGCGCuuCA-CGCU- -5'
24662 5' -52.7 NC_005264.1 + 3611 0.66 0.974664
Target:  5'- ---cGCcGCgggGGGCCGCGAGG-GCGGg -3'
miRNA:   3'- uagaUGuCGa--CUUGGCGCUUCaCGCU- -5'
24662 5' -52.7 NC_005264.1 + 122638 0.66 0.974664
Target:  5'- ---cGCcGCgggGGGCCGCGAGG-GCGGg -3'
miRNA:   3'- uagaUGuCGa--CUUGGCGCUUCaCGCU- -5'
24662 5' -52.7 NC_005264.1 + 57011 0.66 0.967007
Target:  5'- cAUCUGCAGCgGAgucgucugauguguaGCCGUG-GGUcGCGAc -3'
miRNA:   3'- -UAGAUGUCGaCU---------------UGGCGCuUCA-CGCU- -5'
24662 5' -52.7 NC_005264.1 + 125341 0.66 0.965698
Target:  5'- cGUUUu--GUUGAGCCGCGAGcccccguagcuGUGCGAu -3'
miRNA:   3'- -UAGAuguCGACUUGGCGCUU-----------CACGCU- -5'
24662 5' -52.7 NC_005264.1 + 121684 0.66 0.965698
Target:  5'- cGUCUACAGaguccuCUGGccccgACCGCGAGGgcaGCGu -3'
miRNA:   3'- -UAGAUGUC------GACU-----UGGCGCUUCa--CGCu -5'
24662 5' -52.7 NC_005264.1 + 2657 0.66 0.965698
Target:  5'- cGUCUACAGaguccuCUGGccccgACCGCGAGGgcaGCGu -3'
miRNA:   3'- -UAGAUGUC------GACU-----UGGCGCUUCa--CGCu -5'
24662 5' -52.7 NC_005264.1 + 6314 0.66 0.965698
Target:  5'- cGUUUu--GUUGAGCCGCGAGcccccguagcuGUGCGAu -3'
miRNA:   3'- -UAGAuguCGACUUGGCGCUU-----------CACGCU- -5'
24662 5' -52.7 NC_005264.1 + 17386 0.67 0.962267
Target:  5'- ---aACAGCgaacuuuaUGGGCUGCGAagaGGUGCGGc -3'
miRNA:   3'- uagaUGUCG--------ACUUGGCGCU---UCACGCU- -5'
24662 5' -52.7 NC_005264.1 + 101103 0.67 0.954704
Target:  5'- uUCUucACAGuCUGGGCCaCGGAG-GCGAc -3'
miRNA:   3'- uAGA--UGUC-GACUUGGcGCUUCaCGCU- -5'
24662 5' -52.7 NC_005264.1 + 104426 0.67 0.946177
Target:  5'- uUCUuCAGCgcuACCGUGggGgGCGAa -3'
miRNA:   3'- uAGAuGUCGacuUGGCGCuuCaCGCU- -5'
24662 5' -52.7 NC_005264.1 + 106533 0.67 0.946177
Target:  5'- ---gGCAGCgcGGCCGCGGAGUuuuucGCGAg -3'
miRNA:   3'- uagaUGUCGacUUGGCGCUUCA-----CGCU- -5'
24662 5' -52.7 NC_005264.1 + 123916 0.67 0.946177
Target:  5'- gGUCUcCGG--GGACCGCGGAG-GCGAg -3'
miRNA:   3'- -UAGAuGUCgaCUUGGCGCUUCaCGCU- -5'
24662 5' -52.7 NC_005264.1 + 4890 0.67 0.946177
Target:  5'- gGUCUcCGG--GGACCGCGGAG-GCGAg -3'
miRNA:   3'- -UAGAuGUCgaCUUGGCGCUUCaCGCU- -5'
24662 5' -52.7 NC_005264.1 + 50314 0.67 0.946177
Target:  5'- -gUUACGGCcugGAGCCGCGAGuacGCGGc -3'
miRNA:   3'- uaGAUGUCGa--CUUGGCGCUUca-CGCU- -5'
24662 5' -52.7 NC_005264.1 + 72585 0.68 0.941542
Target:  5'- --aUAUGGCUGGGCgCGCGAugaAGUGCu- -3'
miRNA:   3'- uagAUGUCGACUUG-GCGCU---UCACGcu -5'
24662 5' -52.7 NC_005264.1 + 37562 0.68 0.941542
Target:  5'- ---gACAGCgcgccGCCGCGGAGgGCGAa -3'
miRNA:   3'- uagaUGUCGacu--UGGCGCUUCaCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.