Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24662 | 5' | -52.7 | NC_005264.1 | + | 99940 | 1.07 | 0.007264 |
Target: 5'- cAUCUACAGCUGAACCGCGAAGUGCGAu -3' miRNA: 3'- -UAGAUGUCGACUUGGCGCUUCACGCU- -5' |
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24662 | 5' | -52.7 | NC_005264.1 | + | 106667 | 0.77 | 0.501717 |
Target: 5'- -aCUACGGCagagGAACuccgCGCGGAGUGCGAa -3' miRNA: 3'- uaGAUGUCGa---CUUG----GCGCUUCACGCU- -5' |
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24662 | 5' | -52.7 | NC_005264.1 | + | 43545 | 0.74 | 0.657334 |
Target: 5'- cGUCUGCAGCUGcccagccACCGCGAGcaaccgGCGAg -3' miRNA: 3'- -UAGAUGUCGACu------UGGCGCUUca----CGCU- -5' |
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24662 | 5' | -52.7 | NC_005264.1 | + | 162814 | 0.73 | 0.706398 |
Target: 5'- ---aACAGCUaGGGCCGCGGcguuauggcgugccGGUGCGAa -3' miRNA: 3'- uagaUGUCGA-CUUGGCGCU--------------UCACGCU- -5' |
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24662 | 5' | -52.7 | NC_005264.1 | + | 133062 | 0.72 | 0.779292 |
Target: 5'- -cCUACguGGCgugcGAGCCGCGAgcgagcuguGGUGCGAg -3' miRNA: 3'- uaGAUG--UCGa---CUUGGCGCU---------UCACGCU- -5' |
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24662 | 5' | -52.7 | NC_005264.1 | + | 139108 | 0.72 | 0.788783 |
Target: 5'- -gCUGCuGCUGAGCgGCGgcGUGUGc -3' miRNA: 3'- uaGAUGuCGACUUGgCGCuuCACGCu -5' |
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24662 | 5' | -52.7 | NC_005264.1 | + | 5295 | 0.71 | 0.825155 |
Target: 5'- ---gGCGGCUGAcCCGUGggGcggGCGAc -3' miRNA: 3'- uagaUGUCGACUuGGCGCuuCa--CGCU- -5' |
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24662 | 5' | -52.7 | NC_005264.1 | + | 124322 | 0.71 | 0.825155 |
Target: 5'- ---gGCGGCUGAcCCGUGggGcggGCGAc -3' miRNA: 3'- uagaUGUCGACUuGGCGCuuCa--CGCU- -5' |
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24662 | 5' | -52.7 | NC_005264.1 | + | 103808 | 0.7 | 0.866375 |
Target: 5'- ---aGCGGCgGGACCGCGggGcuUGCGc -3' miRNA: 3'- uagaUGUCGaCUUGGCGCuuC--ACGCu -5' |
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24662 | 5' | -52.7 | NC_005264.1 | + | 143343 | 0.69 | 0.902023 |
Target: 5'- cGUCUgGCAGCUgGAACCuCGcAGGUGCGc -3' miRNA: 3'- -UAGA-UGUCGA-CUUGGcGC-UUCACGCu -5' |
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24662 | 5' | -52.7 | NC_005264.1 | + | 80462 | 0.68 | 0.920478 |
Target: 5'- ---gGCAGCggUGGugUGCGAAGUGCu- -3' miRNA: 3'- uagaUGUCG--ACUugGCGCUUCACGcu -5' |
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24662 | 5' | -52.7 | NC_005264.1 | + | 56071 | 0.68 | 0.926125 |
Target: 5'- uUCUGCGacgcccGCUGAcGCCGCGucuuGUGCGu -3' miRNA: 3'- uAGAUGU------CGACU-UGGCGCuu--CACGCu -5' |
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24662 | 5' | -52.7 | NC_005264.1 | + | 4264 | 0.68 | 0.931517 |
Target: 5'- -cUUGCcGCgcggGAACCGCGggGcgGCGGc -3' miRNA: 3'- uaGAUGuCGa---CUUGGCGCuuCa-CGCU- -5' |
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24662 | 5' | -52.7 | NC_005264.1 | + | 123291 | 0.68 | 0.931517 |
Target: 5'- -cUUGCcGCgcggGAACCGCGggGcgGCGGc -3' miRNA: 3'- uaGAUGuCGa---CUUGGCGCuuCa-CGCU- -5' |
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24662 | 5' | -52.7 | NC_005264.1 | + | 32016 | 0.68 | 0.936153 |
Target: 5'- --aUGCuGCgGAACCGCcucgggcugccccGGAGUGCGAg -3' miRNA: 3'- uagAUGuCGaCUUGGCG-------------CUUCACGCU- -5' |
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24662 | 5' | -52.7 | NC_005264.1 | + | 151043 | 0.68 | 0.936153 |
Target: 5'- --aUGCuGCgGAACCGCcucgggcugccccGGAGUGCGAg -3' miRNA: 3'- uagAUGuCGaCUUGGCG-------------CUUCACGCU- -5' |
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24662 | 5' | -52.7 | NC_005264.1 | + | 72585 | 0.68 | 0.941542 |
Target: 5'- --aUAUGGCUGGGCgCGCGAugaAGUGCu- -3' miRNA: 3'- uagAUGUCGACUUG-GCGCU---UCACGcu -5' |
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24662 | 5' | -52.7 | NC_005264.1 | + | 37562 | 0.68 | 0.941542 |
Target: 5'- ---gACAGCgcgccGCCGCGGAGgGCGAa -3' miRNA: 3'- uagaUGUCGacu--UGGCGCUUCaCGCU- -5' |
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24662 | 5' | -52.7 | NC_005264.1 | + | 50314 | 0.67 | 0.946177 |
Target: 5'- -gUUACGGCcugGAGCCGCGAGuacGCGGc -3' miRNA: 3'- uaGAUGUCGa--CUUGGCGCUUca-CGCU- -5' |
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24662 | 5' | -52.7 | NC_005264.1 | + | 4890 | 0.67 | 0.946177 |
Target: 5'- gGUCUcCGG--GGACCGCGGAG-GCGAg -3' miRNA: 3'- -UAGAuGUCgaCUUGGCGCUUCaCGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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