Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24662 | 5' | -52.7 | NC_005264.1 | + | 124322 | 0.71 | 0.825155 |
Target: 5'- ---gGCGGCUGAcCCGUGggGcggGCGAc -3' miRNA: 3'- uagaUGUCGACUuGGCGCuuCa--CGCU- -5' |
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24662 | 5' | -52.7 | NC_005264.1 | + | 43545 | 0.74 | 0.657334 |
Target: 5'- cGUCUGCAGCUGcccagccACCGCGAGcaaccgGCGAg -3' miRNA: 3'- -UAGAUGUCGACu------UGGCGCUUca----CGCU- -5' |
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24662 | 5' | -52.7 | NC_005264.1 | + | 106667 | 0.77 | 0.501717 |
Target: 5'- -aCUACGGCagagGAACuccgCGCGGAGUGCGAa -3' miRNA: 3'- uaGAUGUCGa---CUUG----GCGCUUCACGCU- -5' |
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24662 | 5' | -52.7 | NC_005264.1 | + | 99940 | 1.07 | 0.007264 |
Target: 5'- cAUCUACAGCUGAACCGCGAAGUGCGAu -3' miRNA: 3'- -UAGAUGUCGACUUGGCGCUUCACGCU- -5' |
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24662 | 5' | -52.7 | NC_005264.1 | + | 72585 | 0.68 | 0.941542 |
Target: 5'- --aUAUGGCUGGGCgCGCGAugaAGUGCu- -3' miRNA: 3'- uagAUGUCGACUUG-GCGCU---UCACGcu -5' |
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24662 | 5' | -52.7 | NC_005264.1 | + | 37562 | 0.68 | 0.941542 |
Target: 5'- ---gACAGCgcgccGCCGCGGAGgGCGAa -3' miRNA: 3'- uagaUGUCGacu--UGGCGCUUCaCGCU- -5' |
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24662 | 5' | -52.7 | NC_005264.1 | + | 71816 | 0.66 | 0.977234 |
Target: 5'- ---aGCGGCcGAAgccgcCCGCGggGUcGCGAa -3' miRNA: 3'- uagaUGUCGaCUU-----GGCGCuuCA-CGCU- -5' |
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24662 | 5' | -52.7 | NC_005264.1 | + | 45768 | 0.66 | 0.977234 |
Target: 5'- -cCUGC-GCgGGGCgCGCGGAGUGgGGa -3' miRNA: 3'- uaGAUGuCGaCUUG-GCGCUUCACgCU- -5' |
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24662 | 5' | -52.7 | NC_005264.1 | + | 125341 | 0.66 | 0.965698 |
Target: 5'- cGUUUu--GUUGAGCCGCGAGcccccguagcuGUGCGAu -3' miRNA: 3'- -UAGAuguCGACUUGGCGCUU-----------CACGCU- -5' |
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24662 | 5' | -52.7 | NC_005264.1 | + | 121684 | 0.66 | 0.965698 |
Target: 5'- cGUCUACAGaguccuCUGGccccgACCGCGAGGgcaGCGu -3' miRNA: 3'- -UAGAUGUC------GACU-----UGGCGCUUCa--CGCu -5' |
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24662 | 5' | -52.7 | NC_005264.1 | + | 123916 | 0.67 | 0.946177 |
Target: 5'- gGUCUcCGG--GGACCGCGGAG-GCGAg -3' miRNA: 3'- -UAGAuGUCgaCUUGGCGCUUCaCGCU- -5' |
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24662 | 5' | -52.7 | NC_005264.1 | + | 56071 | 0.68 | 0.926125 |
Target: 5'- uUCUGCGacgcccGCUGAcGCCGCGucuuGUGCGu -3' miRNA: 3'- uAGAUGU------CGACU-UGGCGCuu--CACGCu -5' |
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24662 | 5' | -52.7 | NC_005264.1 | + | 57011 | 0.66 | 0.967007 |
Target: 5'- cAUCUGCAGCgGAgucgucugauguguaGCCGUG-GGUcGCGAc -3' miRNA: 3'- -UAGAUGUCGaCU---------------UGGCGCuUCA-CGCU- -5' |
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24662 | 5' | -52.7 | NC_005264.1 | + | 123291 | 0.68 | 0.931517 |
Target: 5'- -cUUGCcGCgcggGAACCGCGggGcgGCGGc -3' miRNA: 3'- uaGAUGuCGa---CUUGGCGCuuCa-CGCU- -5' |
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24662 | 5' | -52.7 | NC_005264.1 | + | 101103 | 0.67 | 0.954704 |
Target: 5'- uUCUucACAGuCUGGGCCaCGGAG-GCGAc -3' miRNA: 3'- uAGA--UGUC-GACUUGGcGCUUCaCGCU- -5' |
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24662 | 5' | -52.7 | NC_005264.1 | + | 122638 | 0.66 | 0.974664 |
Target: 5'- ---cGCcGCgggGGGCCGCGAGG-GCGGg -3' miRNA: 3'- uagaUGuCGa--CUUGGCGCUUCaCGCU- -5' |
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24662 | 5' | -52.7 | NC_005264.1 | + | 102975 | 0.66 | 0.979606 |
Target: 5'- uGUCUcucGCGGgUucgcGAACCGCGA-GUGCGu -3' miRNA: 3'- -UAGA---UGUCgA----CUUGGCGCUuCACGCu -5' |
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24662 | 5' | -52.7 | NC_005264.1 | + | 151043 | 0.68 | 0.936153 |
Target: 5'- --aUGCuGCgGAACCGCcucgggcugccccGGAGUGCGAg -3' miRNA: 3'- uagAUGuCGaCUUGGCG-------------CUUCACGCU- -5' |
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24662 | 5' | -52.7 | NC_005264.1 | + | 133062 | 0.72 | 0.779292 |
Target: 5'- -cCUACguGGCgugcGAGCCGCGAgcgagcuguGGUGCGAg -3' miRNA: 3'- uaGAUG--UCGa---CUUGGCGCU---------UCACGCU- -5' |
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24662 | 5' | -52.7 | NC_005264.1 | + | 5295 | 0.71 | 0.825155 |
Target: 5'- ---gGCGGCUGAcCCGUGggGcggGCGAc -3' miRNA: 3'- uagaUGUCGACUuGGCGCuuCa--CGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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