Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24662 | 5' | -52.7 | NC_005264.1 | + | 131968 | 0.66 | 0.979606 |
Target: 5'- -aCUACAGgUGGGCuCGCGAcgacaggccGGUGgCGGu -3' miRNA: 3'- uaGAUGUCgACUUG-GCGCU---------UCAC-GCU- -5' |
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24662 | 5' | -52.7 | NC_005264.1 | + | 162814 | 0.73 | 0.706398 |
Target: 5'- ---aACAGCUaGGGCCGCGGcguuauggcgugccGGUGCGAa -3' miRNA: 3'- uagaUGUCGA-CUUGGCGCU--------------UCACGCU- -5' |
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24662 | 5' | -52.7 | NC_005264.1 | + | 139108 | 0.72 | 0.788783 |
Target: 5'- -gCUGCuGCUGAGCgGCGgcGUGUGc -3' miRNA: 3'- uaGAUGuCGACUUGgCGCuuCACGCu -5' |
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24662 | 5' | -52.7 | NC_005264.1 | + | 5295 | 0.71 | 0.825155 |
Target: 5'- ---gGCGGCUGAcCCGUGggGcggGCGAc -3' miRNA: 3'- uagaUGUCGACUuGGCGCuuCa--CGCU- -5' |
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24662 | 5' | -52.7 | NC_005264.1 | + | 103808 | 0.7 | 0.866375 |
Target: 5'- ---aGCGGCgGGACCGCGggGcuUGCGc -3' miRNA: 3'- uagaUGUCGaCUUGGCGCuuC--ACGCu -5' |
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24662 | 5' | -52.7 | NC_005264.1 | + | 143343 | 0.69 | 0.902023 |
Target: 5'- cGUCUgGCAGCUgGAACCuCGcAGGUGCGc -3' miRNA: 3'- -UAGA-UGUCGA-CUUGGcGC-UUCACGCu -5' |
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24662 | 5' | -52.7 | NC_005264.1 | + | 80462 | 0.68 | 0.920478 |
Target: 5'- ---gGCAGCggUGGugUGCGAAGUGCu- -3' miRNA: 3'- uagaUGUCG--ACUugGCGCUUCACGcu -5' |
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24662 | 5' | -52.7 | NC_005264.1 | + | 4264 | 0.68 | 0.931517 |
Target: 5'- -cUUGCcGCgcggGAACCGCGggGcgGCGGc -3' miRNA: 3'- uaGAUGuCGa---CUUGGCGCuuCa-CGCU- -5' |
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24662 | 5' | -52.7 | NC_005264.1 | + | 32016 | 0.68 | 0.936153 |
Target: 5'- --aUGCuGCgGAACCGCcucgggcugccccGGAGUGCGAg -3' miRNA: 3'- uagAUGuCGaCUUGGCG-------------CUUCACGCU- -5' |
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24662 | 5' | -52.7 | NC_005264.1 | + | 104426 | 0.67 | 0.946177 |
Target: 5'- uUCUuCAGCgcuACCGUGggGgGCGAa -3' miRNA: 3'- uAGAuGUCGacuUGGCGCuuCaCGCU- -5' |
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24662 | 5' | -52.7 | NC_005264.1 | + | 3611 | 0.66 | 0.974664 |
Target: 5'- ---cGCcGCgggGGGCCGCGAGG-GCGGg -3' miRNA: 3'- uagaUGuCGa--CUUGGCGCUUCaCGCU- -5' |
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24662 | 5' | -52.7 | NC_005264.1 | + | 6314 | 0.66 | 0.965698 |
Target: 5'- cGUUUu--GUUGAGCCGCGAGcccccguagcuGUGCGAu -3' miRNA: 3'- -UAGAuguCGACUUGGCGCUU-----------CACGCU- -5' |
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24662 | 5' | -52.7 | NC_005264.1 | + | 2657 | 0.66 | 0.965698 |
Target: 5'- cGUCUACAGaguccuCUGGccccgACCGCGAGGgcaGCGu -3' miRNA: 3'- -UAGAUGUC------GACU-----UGGCGCUUCa--CGCu -5' |
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24662 | 5' | -52.7 | NC_005264.1 | + | 17386 | 0.67 | 0.962267 |
Target: 5'- ---aACAGCgaacuuuaUGGGCUGCGAagaGGUGCGGc -3' miRNA: 3'- uagaUGUCG--------ACUUGGCGCU---UCACGCU- -5' |
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24662 | 5' | -52.7 | NC_005264.1 | + | 50314 | 0.67 | 0.946177 |
Target: 5'- -gUUACGGCcugGAGCCGCGAGuacGCGGc -3' miRNA: 3'- uaGAUGUCGa--CUUGGCGCUUca-CGCU- -5' |
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24662 | 5' | -52.7 | NC_005264.1 | + | 4890 | 0.67 | 0.946177 |
Target: 5'- gGUCUcCGG--GGACCGCGGAG-GCGAg -3' miRNA: 3'- -UAGAuGUCgaCUUGGCGCUUCaCGCU- -5' |
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24662 | 5' | -52.7 | NC_005264.1 | + | 106533 | 0.67 | 0.946177 |
Target: 5'- ---gGCAGCgcGGCCGCGGAGUuuuucGCGAg -3' miRNA: 3'- uagaUGUCGacUUGGCGCUUCA-----CGCU- -5' |
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24662 | 5' | -52.7 | NC_005264.1 | + | 102975 | 0.66 | 0.979606 |
Target: 5'- uGUCUcucGCGGgUucgcGAACCGCGA-GUGCGu -3' miRNA: 3'- -UAGA---UGUCgA----CUUGGCGCUuCACGCu -5' |
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24662 | 5' | -52.7 | NC_005264.1 | + | 106667 | 0.77 | 0.501717 |
Target: 5'- -aCUACGGCagagGAACuccgCGCGGAGUGCGAa -3' miRNA: 3'- uaGAUGUCGa---CUUG----GCGCUUCACGCU- -5' |
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24662 | 5' | -52.7 | NC_005264.1 | + | 43545 | 0.74 | 0.657334 |
Target: 5'- cGUCUGCAGCUGcccagccACCGCGAGcaaccgGCGAg -3' miRNA: 3'- -UAGAUGUCGACu------UGGCGCUUca----CGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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