miRNA display CGI


Results 21 - 33 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24663 3' -49 NC_005264.1 + 28429 0.67 0.997355
Target:  5'- -------gGUAgGACCGAACGGCagCUg -3'
miRNA:   3'- acuuuaaaCAUgCUGGCUUGCCGg-GA- -5'
24663 3' -49 NC_005264.1 + 116656 0.67 0.996866
Target:  5'- cGAGGUUguagAUGGCgGGGCGGCCg- -3'
miRNA:   3'- aCUUUAAaca-UGCUGgCUUGCCGGga -5'
24663 3' -49 NC_005264.1 + 72376 0.68 0.995662
Target:  5'- uUGGAcUUUGUuugACGGCCGcGCcGCCCa -3'
miRNA:   3'- -ACUUuAAACA---UGCUGGCuUGcCGGGa -5'
24663 3' -49 NC_005264.1 + 48719 0.68 0.995593
Target:  5'- gGAGAUgag-GCGGCCGGcgaugcugaugaaGCGGCUCg -3'
miRNA:   3'- aCUUUAaacaUGCUGGCU-------------UGCCGGGa -5'
24663 3' -49 NC_005264.1 + 82178 0.68 0.994931
Target:  5'- -------cGUGCGGCCGGucggcgGCGGCCa- -3'
miRNA:   3'- acuuuaaaCAUGCUGGCU------UGCCGGga -5'
24663 3' -49 NC_005264.1 + 40196 0.68 0.994104
Target:  5'- aGGuguAUggGUA-GACCGAGCGGgCCUg -3'
miRNA:   3'- aCUu--UAaaCAUgCUGGCUUGCCgGGA- -5'
24663 3' -49 NC_005264.1 + 120890 0.68 0.993558
Target:  5'- cGAGAUUUGaccACGcggcggaaaaacuacGCCGAGCGGCUUUc -3'
miRNA:   3'- aCUUUAAACa--UGC---------------UGGCUUGCCGGGA- -5'
24663 3' -49 NC_005264.1 + 85315 0.71 0.973324
Target:  5'- uUGAGcga--UugGGCCGAACGGaCCCUg -3'
miRNA:   3'- -ACUUuaaacAugCUGGCUUGCC-GGGA- -5'
24663 3' -49 NC_005264.1 + 886 0.71 0.967276
Target:  5'- -------cGUACGACUGGguguACGGCCCc -3'
miRNA:   3'- acuuuaaaCAUGCUGGCU----UGCCGGGa -5'
24663 3' -49 NC_005264.1 + 119912 0.71 0.967276
Target:  5'- -------cGUACGACUGGguguACGGCCCc -3'
miRNA:   3'- acuuuaaaCAUGCUGGCU----UGCCGGGa -5'
24663 3' -49 NC_005264.1 + 109935 0.73 0.933544
Target:  5'- cGAAGUggcgGUucgcCGACCuuACGGCCCUg -3'
miRNA:   3'- aCUUUAaa--CAu---GCUGGcuUGCCGGGA- -5'
24663 3' -49 NC_005264.1 + 242 0.73 0.928186
Target:  5'- aUGAGGUUUGUGCGgcggcGCUGGACGcggcagaaGCCCa -3'
miRNA:   3'- -ACUUUAAACAUGC-----UGGCUUGC--------CGGGa -5'
24663 3' -49 NC_005264.1 + 101162 1.09 0.014095
Target:  5'- gUGAAAUUUGUACGACCGAACGGCCCUg -3'
miRNA:   3'- -ACUUUAAACAUGCUGGCUUGCCGGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.