Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24663 | 5' | -47.9 | NC_005264.1 | + | 6587 | 0.67 | 0.999165 |
Target: 5'- cCCAgGGGCCGAcaggucaacGGCGAgCGCgUGGGAAa -3' miRNA: 3'- -GGU-CCCGGUU---------UUGUUaGUG-ACUCUUa -5' |
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24663 | 5' | -47.9 | NC_005264.1 | + | 14579 | 0.66 | 0.999325 |
Target: 5'- -aAGGuGCuCAAGACGGUCuuUGAGAAc -3' miRNA: 3'- ggUCC-CG-GUUUUGUUAGugACUCUUa -5' |
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24663 | 5' | -47.9 | NC_005264.1 | + | 20168 | 0.68 | 0.995541 |
Target: 5'- aCCAGuucGGCCGAAACGuuucgugAUCGCUGAu--- -3' miRNA: 3'- -GGUC---CCGGUUUUGU-------UAGUGACUcuua -5' |
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24663 | 5' | -47.9 | NC_005264.1 | + | 21350 | 0.66 | 0.999568 |
Target: 5'- gCCGGGGCCGGAugAG--GCUGuagccguguucAGGAUa -3' miRNA: 3'- -GGUCCCGGUUUugUUagUGAC-----------UCUUA- -5' |
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24663 | 5' | -47.9 | NC_005264.1 | + | 24209 | 0.66 | 0.999568 |
Target: 5'- gCCGGuGGCCGAAGCcagCGCgccGGGAu- -3' miRNA: 3'- -GGUC-CCGGUUUUGuuaGUGa--CUCUua -5' |
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24663 | 5' | -47.9 | NC_005264.1 | + | 25442 | 0.66 | 0.999568 |
Target: 5'- uCCAGGGCCuccucGAACugcuuGUCGCcgacgUGGGGGc -3' miRNA: 3'- -GGUCCCGGu----UUUGu----UAGUG-----ACUCUUa -5' |
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24663 | 5' | -47.9 | NC_005264.1 | + | 33757 | 0.67 | 0.998156 |
Target: 5'- uCUAGGGCCAGGAuCGAggACUuGGAAa -3' miRNA: 3'- -GGUCCCGGUUUU-GUUagUGAcUCUUa -5' |
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24663 | 5' | -47.9 | NC_005264.1 | + | 41155 | 0.66 | 0.999658 |
Target: 5'- gUCGGGGCCAGAGgAcUCugUagacGAGAc- -3' miRNA: 3'- -GGUCCCGGUUUUgUuAGugA----CUCUua -5' |
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24663 | 5' | -47.9 | NC_005264.1 | + | 47737 | 0.69 | 0.990732 |
Target: 5'- gCCAGGGCCAcuuccGCGA--GCUaGAGAGUg -3' miRNA: 3'- -GGUCCCGGUuu---UGUUagUGA-CUCUUA- -5' |
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24663 | 5' | -47.9 | NC_005264.1 | + | 54005 | 0.67 | 0.999165 |
Target: 5'- aUAGGGuaaucCCAGAGCAAgagcUCGCUGAGc-- -3' miRNA: 3'- gGUCCC-----GGUUUUGUU----AGUGACUCuua -5' |
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24663 | 5' | -47.9 | NC_005264.1 | + | 60433 | 0.66 | 0.999458 |
Target: 5'- aCGGGGUauuuuGCGAUCGCguagGAGAu- -3' miRNA: 3'- gGUCCCGguuu-UGUUAGUGa---CUCUua -5' |
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24663 | 5' | -47.9 | NC_005264.1 | + | 77398 | 0.68 | 0.997304 |
Target: 5'- uCCAGGGCCGGcccgcauauggauAGCGAcgACgUGAGggUg -3' miRNA: 3'- -GGUCCCGGUU-------------UUGUUagUG-ACUCuuA- -5' |
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24663 | 5' | -47.9 | NC_005264.1 | + | 77620 | 0.66 | 0.999568 |
Target: 5'- aCAGGGCuCGGAGuCGAacUCuCUGGGAGg -3' miRNA: 3'- gGUCCCG-GUUUU-GUU--AGuGACUCUUa -5' |
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24663 | 5' | -47.9 | NC_005264.1 | + | 82582 | 0.68 | 0.996273 |
Target: 5'- cUCGGGGCCAGGACGAagCACaGAc--- -3' miRNA: 3'- -GGUCCCGGUUUUGUUa-GUGaCUcuua -5' |
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24663 | 5' | -47.9 | NC_005264.1 | + | 87631 | 0.71 | 0.977724 |
Target: 5'- gCAGGGCCGAuGCAGcCGCgUGGGGc- -3' miRNA: 3'- gGUCCCGGUUuUGUUaGUG-ACUCUua -5' |
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24663 | 5' | -47.9 | NC_005264.1 | + | 93273 | 0.66 | 0.999568 |
Target: 5'- gCCAGGGCCccGGCu-UCAgUGgAGGAa -3' miRNA: 3'- -GGUCCCGGuuUUGuuAGUgAC-UCUUa -5' |
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24663 | 5' | -47.9 | NC_005264.1 | + | 94534 | 0.66 | 0.999658 |
Target: 5'- -gAGGGCagcGGCGccgCACUGAGAAa -3' miRNA: 3'- ggUCCCGguuUUGUua-GUGACUCUUa -5' |
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24663 | 5' | -47.9 | NC_005264.1 | + | 94618 | 0.68 | 0.997784 |
Target: 5'- gCCGGcGCgGAuACGucAUCGCUGAGGAUa -3' miRNA: 3'- -GGUCcCGgUUuUGU--UAGUGACUCUUA- -5' |
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24663 | 5' | -47.9 | NC_005264.1 | + | 95077 | 0.66 | 0.999658 |
Target: 5'- --uGGGCCuggcgauAAGCGAcgcccugauuUCGCUGAGAGc -3' miRNA: 3'- gguCCCGGu------UUUGUU----------AGUGACUCUUa -5' |
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24663 | 5' | -47.9 | NC_005264.1 | + | 95182 | 0.66 | 0.999458 |
Target: 5'- aCAGuGUCGAAACcggCGCUGAGGAa -3' miRNA: 3'- gGUCcCGGUUUUGuuaGUGACUCUUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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