miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24664 3' -61.5 NC_005264.1 + 78534 0.66 0.638354
Target:  5'- -cCGUGCCC-GGUGCacgacuuGGCCCauAGCAAg -3'
miRNA:   3'- uaGUACGGGuCCACG-------CCGGGc-UCGUU- -5'
24664 3' -61.5 NC_005264.1 + 64758 0.66 0.609066
Target:  5'- -----cCCCGGG-GCGGCCgGGGCAc -3'
miRNA:   3'- uaguacGGGUCCaCGCCGGgCUCGUu -5'
24664 3' -61.5 NC_005264.1 + 159563 0.66 0.578918
Target:  5'- -cCGUcGCCCAGGgacguggcgcUGCGGCUCcugGAGCGAc -3'
miRNA:   3'- uaGUA-CGGGUCC----------ACGCCGGG---CUCGUU- -5'
24664 3' -61.5 NC_005264.1 + 40536 0.66 0.578918
Target:  5'- -cCGUcGCCCAGGgacguggcgcUGCGGCUCcugGAGCGAc -3'
miRNA:   3'- uaGUA-CGGGUCC----------ACGCCGGG---CUCGUU- -5'
24664 3' -61.5 NC_005264.1 + 159368 0.67 0.549102
Target:  5'- -gCGUGCCaCAucguGGaUGCGGCaCCGGGCGc -3'
miRNA:   3'- uaGUACGG-GU----CC-ACGCCG-GGCUCGUu -5'
24664 3' -61.5 NC_005264.1 + 120095 0.67 0.548116
Target:  5'- aGUCGUGCCCaccGGGUGCcgcgcagaaguggGGCgcagCGAGCAGg -3'
miRNA:   3'- -UAGUACGGG---UCCACG-------------CCGg---GCUCGUU- -5'
24664 3' -61.5 NC_005264.1 + 110585 0.67 0.51978
Target:  5'- -cCGUGgCCGGGUgaguagGCGGgggcCCCGAGCAGa -3'
miRNA:   3'- uaGUACgGGUCCA------CGCC----GGGCUCGUU- -5'
24664 3' -61.5 NC_005264.1 + 158199 0.68 0.481695
Target:  5'- cUCGUGUCCgAGaaGCGGCCCG-GCGAu -3'
miRNA:   3'- uAGUACGGG-UCcaCGCCGGGCuCGUU- -5'
24664 3' -61.5 NC_005264.1 + 39172 0.68 0.481695
Target:  5'- cUCGUGUCCgAGaaGCGGCCCG-GCGAu -3'
miRNA:   3'- uAGUACGGG-UCcaCGCCGGGCuCGUU- -5'
24664 3' -61.5 NC_005264.1 + 17644 0.73 0.244579
Target:  5'- uGUUAUGCUCAGGUGuCGGCCUagcGGCAAc -3'
miRNA:   3'- -UAGUACGGGUCCAC-GCCGGGc--UCGUU- -5'
24664 3' -61.5 NC_005264.1 + 101327 1.03 0.001741
Target:  5'- aAUCAUGCCCAGGUGCGGCCCGAGCAAc -3'
miRNA:   3'- -UAGUACGGGUCCACGCCGGGCUCGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.