Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24664 | 3' | -61.5 | NC_005264.1 | + | 159563 | 0.66 | 0.578918 |
Target: 5'- -cCGUcGCCCAGGgacguggcgcUGCGGCUCcugGAGCGAc -3' miRNA: 3'- uaGUA-CGGGUCC----------ACGCCGGG---CUCGUU- -5' |
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24664 | 3' | -61.5 | NC_005264.1 | + | 110585 | 0.67 | 0.51978 |
Target: 5'- -cCGUGgCCGGGUgaguagGCGGgggcCCCGAGCAGa -3' miRNA: 3'- uaGUACgGGUCCA------CGCC----GGGCUCGUU- -5' |
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24664 | 3' | -61.5 | NC_005264.1 | + | 158199 | 0.68 | 0.481695 |
Target: 5'- cUCGUGUCCgAGaaGCGGCCCG-GCGAu -3' miRNA: 3'- uAGUACGGG-UCcaCGCCGGGCuCGUU- -5' |
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24664 | 3' | -61.5 | NC_005264.1 | + | 101327 | 1.03 | 0.001741 |
Target: 5'- aAUCAUGCCCAGGUGCGGCCCGAGCAAc -3' miRNA: 3'- -UAGUACGGGUCCACGCCGGGCUCGUU- -5' |
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24664 | 3' | -61.5 | NC_005264.1 | + | 17644 | 0.73 | 0.244579 |
Target: 5'- uGUUAUGCUCAGGUGuCGGCCUagcGGCAAc -3' miRNA: 3'- -UAGUACGGGUCCAC-GCCGGGc--UCGUU- -5' |
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24664 | 3' | -61.5 | NC_005264.1 | + | 39172 | 0.68 | 0.481695 |
Target: 5'- cUCGUGUCCgAGaaGCGGCCCG-GCGAu -3' miRNA: 3'- uAGUACGGG-UCcaCGCCGGGCuCGUU- -5' |
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24664 | 3' | -61.5 | NC_005264.1 | + | 120095 | 0.67 | 0.548116 |
Target: 5'- aGUCGUGCCCaccGGGUGCcgcgcagaaguggGGCgcagCGAGCAGg -3' miRNA: 3'- -UAGUACGGG---UCCACG-------------CCGg---GCUCGUU- -5' |
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24664 | 3' | -61.5 | NC_005264.1 | + | 159368 | 0.67 | 0.549102 |
Target: 5'- -gCGUGCCaCAucguGGaUGCGGCaCCGGGCGc -3' miRNA: 3'- uaGUACGG-GU----CC-ACGCCG-GGCUCGUu -5' |
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24664 | 3' | -61.5 | NC_005264.1 | + | 40536 | 0.66 | 0.578918 |
Target: 5'- -cCGUcGCCCAGGgacguggcgcUGCGGCUCcugGAGCGAc -3' miRNA: 3'- uaGUA-CGGGUCC----------ACGCCGGG---CUCGUU- -5' |
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24664 | 3' | -61.5 | NC_005264.1 | + | 64758 | 0.66 | 0.609066 |
Target: 5'- -----cCCCGGG-GCGGCCgGGGCAc -3' miRNA: 3'- uaguacGGGUCCaCGCCGGgCUCGUu -5' |
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24664 | 3' | -61.5 | NC_005264.1 | + | 78534 | 0.66 | 0.638354 |
Target: 5'- -cCGUGCCC-GGUGCacgacuuGGCCCauAGCAAg -3' miRNA: 3'- uaGUACGGGuCCACG-------CCGGGc-UCGUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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