Results 1 - 6 of 6 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
24664 | 5' | -52 | NC_005264.1 | + | 102763 | 0.66 | 0.985943 |
Target: 5'- aGUAggCUaGGGGCgGGCCAGUUCGGUg -3' miRNA: 3'- gCAUa-GAgCUCUG-CUGGUCGAGCUAg -5' |
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24664 | 5' | -52 | NC_005264.1 | + | 13024 | 0.66 | 0.990359 |
Target: 5'- aCGUGUCgCGGGAcccuaCGGCC-GCUCG-UCu -3' miRNA: 3'- -GCAUAGaGCUCU-----GCUGGuCGAGCuAG- -5' |
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24664 | 5' | -52 | NC_005264.1 | + | 137252 | 0.67 | 0.984171 |
Target: 5'- ---cUCUCGuccGGCGGCCAGCUgugUGGUUg -3' miRNA: 3'- gcauAGAGCu--CUGCUGGUCGA---GCUAG- -5' |
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24664 | 5' | -52 | NC_005264.1 | + | 151002 | 0.7 | 0.904642 |
Target: 5'- uCGUGcCUCGAGACGAgaCCcuugaacgagcuaGGCUCuGAUCa -3' miRNA: 3'- -GCAUaGAGCUCUGCU--GG-------------UCGAG-CUAG- -5' |
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24664 | 5' | -52 | NC_005264.1 | + | 88597 | 0.72 | 0.855434 |
Target: 5'- cCGUGUCUgGAGcGCGGCCAGCgcgcuacgugCGAg- -3' miRNA: 3'- -GCAUAGAgCUC-UGCUGGUCGa---------GCUag -5' |
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24664 | 5' | -52 | NC_005264.1 | + | 101361 | 1.12 | 0.005577 |
Target: 5'- aCGUAUCUCGAGACGACCAGCUCGAUCa -3' miRNA: 3'- -GCAUAGAGCUCUGCUGGUCGAGCUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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