miRNA display CGI


Results 1 - 20 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24665 3' -58.2 NC_005264.1 + 87747 0.65 0.848952
Target:  5'- cGCGACUGCgucaaguAGCGcAcacccugccucuccGCGUCAGCUacuccGCCGa -3'
miRNA:   3'- -CGUUGGCG-------UCGC-U--------------CGCAGUCGA-----CGGC- -5'
24665 3' -58.2 NC_005264.1 + 145480 0.66 0.844229
Target:  5'- -aGACCGCGcCGc-CGcCAGCUGCCGc -3'
miRNA:   3'- cgUUGGCGUcGCucGCaGUCGACGGC- -5'
24665 3' -58.2 NC_005264.1 + 60266 0.66 0.844229
Target:  5'- cGCgAGCUGCGGUGAGCG-CcGC-GUCGg -3'
miRNA:   3'- -CG-UUGGCGUCGCUCGCaGuCGaCGGC- -5'
24665 3' -58.2 NC_005264.1 + 50256 0.66 0.844229
Target:  5'- uGCAccuGCCGCGGCG-GCGauUCcgAGUUGCuCGu -3'
miRNA:   3'- -CGU---UGGCGUCGCuCGC--AG--UCGACG-GC- -5'
24665 3' -58.2 NC_005264.1 + 16072 0.66 0.844229
Target:  5'- -gAACCGCcGCGcGGCGcuugCuGUUGCCGg -3'
miRNA:   3'- cgUUGGCGuCGC-UCGCa---GuCGACGGC- -5'
24665 3' -58.2 NC_005264.1 + 155769 0.66 0.83621
Target:  5'- ---cCCGCAGCGcgacGGCGcCGGCcggcGCCGu -3'
miRNA:   3'- cguuGGCGUCGC----UCGCaGUCGa---CGGC- -5'
24665 3' -58.2 NC_005264.1 + 80049 0.66 0.83621
Target:  5'- gGCAuguGCCGUAGCGGauaaguguauacGCuUguGCUGCCu -3'
miRNA:   3'- -CGU---UGGCGUCGCU------------CGcAguCGACGGc -5'
24665 3' -58.2 NC_005264.1 + 36743 0.66 0.83621
Target:  5'- ---cCCGCAGCGcgacGGCGcCGGCcggcGCCGu -3'
miRNA:   3'- cguuGGCGUCGC----UCGCaGUCGa---CGGC- -5'
24665 3' -58.2 NC_005264.1 + 131697 0.66 0.83621
Target:  5'- cGCAAgCGUAGCGugggccuGCG-CGGCguUGCUGg -3'
miRNA:   3'- -CGUUgGCGUCGCu------CGCaGUCG--ACGGC- -5'
24665 3' -58.2 NC_005264.1 + 146821 0.66 0.83621
Target:  5'- uGCAcggaGgCGCGGCGGuCGUCGcCUGCCa -3'
miRNA:   3'- -CGU----UgGCGUCGCUcGCAGUcGACGGc -5'
24665 3' -58.2 NC_005264.1 + 125279 0.66 0.83621
Target:  5'- cGCccuCCGCGGCG-GCG-C-GCUGUCGc -3'
miRNA:   3'- -CGuu-GGCGUCGCuCGCaGuCGACGGC- -5'
24665 3' -58.2 NC_005264.1 + 40642 0.66 0.835398
Target:  5'- cGC-GCCGUcGCGAcGCGgagggucgccguuUCGGUUGCCGc -3'
miRNA:   3'- -CGuUGGCGuCGCU-CGC-------------AGUCGACGGC- -5'
24665 3' -58.2 NC_005264.1 + 112590 0.66 0.831311
Target:  5'- cGCcGCCGCGGCaggugcacaaacuggGAGCGg-GGCccGCCGg -3'
miRNA:   3'- -CGuUGGCGUCG---------------CUCGCagUCGa-CGGC- -5'
24665 3' -58.2 NC_005264.1 + 159777 0.66 0.82801
Target:  5'- cCAGUCGCGGCGAGa--CAGCgUGCCa -3'
miRNA:   3'- cGUUGGCGUCGCUCgcaGUCG-ACGGc -5'
24665 3' -58.2 NC_005264.1 + 40306 0.66 0.82801
Target:  5'- -aAGCUGCgcguagacGGCGAGCG-CAGCagUGUCGg -3'
miRNA:   3'- cgUUGGCG--------UCGCUCGCaGUCG--ACGGC- -5'
24665 3' -58.2 NC_005264.1 + 21515 0.66 0.82801
Target:  5'- cGCcgUCGCAGUGGGCG-CAGgUGUa- -3'
miRNA:   3'- -CGuuGGCGUCGCUCGCaGUCgACGgc -5'
24665 3' -58.2 NC_005264.1 + 40751 0.66 0.82801
Target:  5'- cCAGUCGCGGCGAGa--CAGCgUGCCa -3'
miRNA:   3'- cGUUGGCGUCGCUCgcaGUCG-ACGGc -5'
24665 3' -58.2 NC_005264.1 + 128998 0.66 0.82801
Target:  5'- aGCucuGCCGCGGCGcgcaggggaauAGCuaCAGCcuUGCCGg -3'
miRNA:   3'- -CGu--UGGCGUCGC-----------UCGcaGUCG--ACGGC- -5'
24665 3' -58.2 NC_005264.1 + 17864 0.66 0.82801
Target:  5'- uCGACCGC-GUGAGCaaUCGGCggGCUGa -3'
miRNA:   3'- cGUUGGCGuCGCUCGc-AGUCGa-CGGC- -5'
24665 3' -58.2 NC_005264.1 + 122038 0.66 0.82801
Target:  5'- gGCGAccCCGCGGCaAGCGgcuccgcucUCGGC-GCCGc -3'
miRNA:   3'- -CGUU--GGCGUCGcUCGC---------AGUCGaCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.