miRNA display CGI


Results 1 - 20 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24665 3' -58.2 NC_005264.1 + 87747 0.65 0.848952
Target:  5'- cGCGACUGCgucaaguAGCGcAcacccugccucuccGCGUCAGCUacuccGCCGa -3'
miRNA:   3'- -CGUUGGCG-------UCGC-U--------------CGCAGUCGA-----CGGC- -5'
24665 3' -58.2 NC_005264.1 + 21515 0.66 0.82801
Target:  5'- cGCcgUCGCAGUGGGCG-CAGgUGUa- -3'
miRNA:   3'- -CGuuGGCGUCGCUCGCaGUCgACGgc -5'
24665 3' -58.2 NC_005264.1 + 151864 0.66 0.819639
Target:  5'- gGCGACaCGUGGgGGGCGUCuucgcgggcaucAGCUGUa- -3'
miRNA:   3'- -CGUUG-GCGUCgCUCGCAG------------UCGACGgc -5'
24665 3' -58.2 NC_005264.1 + 129386 0.66 0.819639
Target:  5'- -aGACCGUGGCGGGaauuaauaGUCAGC-GCgGg -3'
miRNA:   3'- cgUUGGCGUCGCUCg-------CAGUCGaCGgC- -5'
24665 3' -58.2 NC_005264.1 + 67416 0.66 0.819639
Target:  5'- gGCAACCGCA--GAGCaaacugCGGCUGgCGa -3'
miRNA:   3'- -CGUUGGCGUcgCUCGca----GUCGACgGC- -5'
24665 3' -58.2 NC_005264.1 + 6435 0.66 0.819639
Target:  5'- ---cUCGCGGCG-GCGUC-GCUGgCGg -3'
miRNA:   3'- cguuGGCGUCGCuCGCAGuCGACgGC- -5'
24665 3' -58.2 NC_005264.1 + 4607 0.66 0.811963
Target:  5'- aGC-GCCGCGGCG-GCGUaGGCgcguucucgaaaaucGCCGg -3'
miRNA:   3'- -CGuUGGCGUCGCuCGCAgUCGa--------------CGGC- -5'
24665 3' -58.2 NC_005264.1 + 31032 0.66 0.811103
Target:  5'- cGguGCCGCcuAGCGGuCGUgCGGCUGCg- -3'
miRNA:   3'- -CguUGGCG--UCGCUcGCA-GUCGACGgc -5'
24665 3' -58.2 NC_005264.1 + 106753 0.66 0.811103
Target:  5'- uGCGGCaCGCAcaagacGCG-GCGUCAGCgGgCGu -3'
miRNA:   3'- -CGUUG-GCGU------CGCuCGCAGUCGaCgGC- -5'
24665 3' -58.2 NC_005264.1 + 40751 0.66 0.82801
Target:  5'- cCAGUCGCGGCGAGa--CAGCgUGCCa -3'
miRNA:   3'- cGUUGGCGUCGCUCgcaGUCG-ACGGc -5'
24665 3' -58.2 NC_005264.1 + 122038 0.66 0.82801
Target:  5'- gGCGAccCCGCGGCaAGCGgcuccgcucUCGGC-GCCGc -3'
miRNA:   3'- -CGUU--GGCGUCGcUCGC---------AGUCGaCGGC- -5'
24665 3' -58.2 NC_005264.1 + 128998 0.66 0.82801
Target:  5'- aGCucuGCCGCGGCGcgcaggggaauAGCuaCAGCcuUGCCGg -3'
miRNA:   3'- -CGu--UGGCGUCGC-----------UCGcaGUCG--ACGGC- -5'
24665 3' -58.2 NC_005264.1 + 50256 0.66 0.844229
Target:  5'- uGCAccuGCCGCGGCG-GCGauUCcgAGUUGCuCGu -3'
miRNA:   3'- -CGU---UGGCGUCGCuCGC--AG--UCGACG-GC- -5'
24665 3' -58.2 NC_005264.1 + 16072 0.66 0.844229
Target:  5'- -gAACCGCcGCGcGGCGcuugCuGUUGCCGg -3'
miRNA:   3'- cgUUGGCGuCGC-UCGCa---GuCGACGGC- -5'
24665 3' -58.2 NC_005264.1 + 125279 0.66 0.83621
Target:  5'- cGCccuCCGCGGCG-GCG-C-GCUGUCGc -3'
miRNA:   3'- -CGuu-GGCGUCGCuCGCaGuCGACGGC- -5'
24665 3' -58.2 NC_005264.1 + 146821 0.66 0.83621
Target:  5'- uGCAcggaGgCGCGGCGGuCGUCGcCUGCCa -3'
miRNA:   3'- -CGU----UgGCGUCGCUcGCAGUcGACGGc -5'
24665 3' -58.2 NC_005264.1 + 131697 0.66 0.83621
Target:  5'- cGCAAgCGUAGCGugggccuGCG-CGGCguUGCUGg -3'
miRNA:   3'- -CGUUgGCGUCGCu------CGCaGUCG--ACGGC- -5'
24665 3' -58.2 NC_005264.1 + 36743 0.66 0.83621
Target:  5'- ---cCCGCAGCGcgacGGCGcCGGCcggcGCCGu -3'
miRNA:   3'- cguuGGCGUCGC----UCGCaGUCGa---CGGC- -5'
24665 3' -58.2 NC_005264.1 + 40642 0.66 0.835398
Target:  5'- cGC-GCCGUcGCGAcGCGgagggucgccguuUCGGUUGCCGc -3'
miRNA:   3'- -CGuUGGCGuCGCU-CGC-------------AGUCGACGGC- -5'
24665 3' -58.2 NC_005264.1 + 17864 0.66 0.82801
Target:  5'- uCGACCGC-GUGAGCaaUCGGCggGCUGa -3'
miRNA:   3'- cGUUGGCGuCGCUCGc-AGUCGa-CGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.