Results 1 - 20 of 144 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24665 | 3' | -58.2 | NC_005264.1 | + | 101693 | 1.11 | 0.00128 |
Target: 5'- cGCAACCGCAGCGAGCGUCAGCUGCCGg -3' miRNA: 3'- -CGUUGGCGUCGCUCGCAGUCGACGGC- -5' |
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24665 | 3' | -58.2 | NC_005264.1 | + | 159985 | 0.83 | 0.107741 |
Target: 5'- cGCAGCCGCAGCGGGCGaCGGCgcgaGCgCGa -3' miRNA: 3'- -CGUUGGCGUCGCUCGCaGUCGa---CG-GC- -5' |
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24665 | 3' | -58.2 | NC_005264.1 | + | 40958 | 0.83 | 0.107741 |
Target: 5'- cGCAGCCGCAGCGGGCGaCGGCgcgaGCgCGa -3' miRNA: 3'- -CGUUGGCGUCGCUCGCaGUCGa---CG-GC- -5' |
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24665 | 3' | -58.2 | NC_005264.1 | + | 42060 | 0.81 | 0.150167 |
Target: 5'- cGCGuugcCCGCGGCGcguGGCGUCAGCUgcGCCGg -3' miRNA: 3'- -CGUu---GGCGUCGC---UCGCAGUCGA--CGGC- -5' |
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24665 | 3' | -58.2 | NC_005264.1 | + | 22719 | 0.75 | 0.323397 |
Target: 5'- uGCGGCgCGCaAGCGuGUGUCuGCUGCCc -3' miRNA: 3'- -CGUUG-GCG-UCGCuCGCAGuCGACGGc -5' |
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24665 | 3' | -58.2 | NC_005264.1 | + | 26156 | 0.75 | 0.328491 |
Target: 5'- -aGGCCGCGGCGAGgacuuucgcggcacUGUCGGCgggGCCGu -3' miRNA: 3'- cgUUGGCGUCGCUC--------------GCAGUCGa--CGGC- -5' |
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24665 | 3' | -58.2 | NC_005264.1 | + | 66537 | 0.74 | 0.376977 |
Target: 5'- aCGACCGCGuuGCGGGCGUCGGCgauuuCCa -3' miRNA: 3'- cGUUGGCGU--CGCUCGCAGUCGac---GGc -5' |
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24665 | 3' | -58.2 | NC_005264.1 | + | 46431 | 0.73 | 0.418747 |
Target: 5'- aGCGACCuGCcGCGGGC-UCAGCgagaGCCGa -3' miRNA: 3'- -CGUUGG-CGuCGCUCGcAGUCGa---CGGC- -5' |
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24665 | 3' | -58.2 | NC_005264.1 | + | 15483 | 0.73 | 0.427432 |
Target: 5'- gGCGAUCGCGGCGGGCaUgGGCcugGCCu -3' miRNA: 3'- -CGUUGGCGUCGCUCGcAgUCGa--CGGc -5' |
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24665 | 3' | -58.2 | NC_005264.1 | + | 135135 | 0.73 | 0.454113 |
Target: 5'- aGUGugCGCauugagAGCGAGCGUCGGCgaggcagagGCCa -3' miRNA: 3'- -CGUugGCG------UCGCUCGCAGUCGa--------CGGc -5' |
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24665 | 3' | -58.2 | NC_005264.1 | + | 156623 | 0.72 | 0.48074 |
Target: 5'- gGCGGCCGCGGCGGggggucaaaggacGCGUCucGCacgGCCa -3' miRNA: 3'- -CGUUGGCGUCGCU-------------CGCAGu-CGa--CGGc -5' |
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24665 | 3' | -58.2 | NC_005264.1 | + | 37596 | 0.72 | 0.48074 |
Target: 5'- gGCGGCCGCGGCGGggggucaaaggacGCGUCucGCacgGCCa -3' miRNA: 3'- -CGUUGGCGUCGCU-------------CGCAGu-CGa--CGGc -5' |
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24665 | 3' | -58.2 | NC_005264.1 | + | 118047 | 0.72 | 0.481672 |
Target: 5'- --uGCCGCGGCGAccgcgGCGUCGGCaacgaucGCCGc -3' miRNA: 3'- cguUGGCGUCGCU-----CGCAGUCGa------CGGC- -5' |
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24665 | 3' | -58.2 | NC_005264.1 | + | 79395 | 0.72 | 0.481672 |
Target: 5'- -gAACCGCcGCGGGCGU-GGCgagGCCGc -3' miRNA: 3'- cgUUGGCGuCGCUCGCAgUCGa--CGGC- -5' |
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24665 | 3' | -58.2 | NC_005264.1 | + | 93077 | 0.72 | 0.510017 |
Target: 5'- aGgGGCCGCGGCGAccucgGCuucUCAGCUcGCCGa -3' miRNA: 3'- -CgUUGGCGUCGCU-----CGc--AGUCGA-CGGC- -5' |
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24665 | 3' | -58.2 | NC_005264.1 | + | 94672 | 0.72 | 0.510974 |
Target: 5'- cGUAGCCGCGGCGGGCG-CcGCaacguucacauaacgGCCGu -3' miRNA: 3'- -CGUUGGCGUCGCUCGCaGuCGa--------------CGGC- -5' |
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24665 | 3' | -58.2 | NC_005264.1 | + | 75412 | 0.71 | 0.529296 |
Target: 5'- cGCGGCCGCGG-GcAGUGUaCGGCggGCCGu -3' miRNA: 3'- -CGUUGGCGUCgC-UCGCA-GUCGa-CGGC- -5' |
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24665 | 3' | -58.2 | NC_005264.1 | + | 6872 | 0.71 | 0.539035 |
Target: 5'- cCGACgGCAGCcaGAGCGUCcGCgaGCCGc -3' miRNA: 3'- cGUUGgCGUCG--CUCGCAGuCGa-CGGC- -5' |
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24665 | 3' | -58.2 | NC_005264.1 | + | 20062 | 0.71 | 0.557703 |
Target: 5'- cGCGGCCccgcGUAGCGAGCaagcaccGUCAGCUcGuCCGa -3' miRNA: 3'- -CGUUGG----CGUCGCUCG-------CAGUCGA-C-GGC- -5' |
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24665 | 3' | -58.2 | NC_005264.1 | + | 75090 | 0.71 | 0.558691 |
Target: 5'- cGCGgcGCUGCGGCaGGCGcCGGC-GCCGa -3' miRNA: 3'- -CGU--UGGCGUCGcUCGCaGUCGaCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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