miRNA display CGI


Results 21 - 40 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24665 3' -58.2 NC_005264.1 + 7951 0.71 0.558691
Target:  5'- aCGGCCGCGGCGucuuUGUC-GCUGCCu -3'
miRNA:   3'- cGUUGGCGUCGCuc--GCAGuCGACGGc -5'
24665 3' -58.2 NC_005264.1 + 153112 0.71 0.568595
Target:  5'- cGCAguuuGCCGCGGCGGGCacaauggcUCAGCgGCgCGa -3'
miRNA:   3'- -CGU----UGGCGUCGCUCGc-------AGUCGaCG-GC- -5'
24665 3' -58.2 NC_005264.1 + 34085 0.71 0.568595
Target:  5'- cGCAguuuGCCGCGGCGGGCacaauggcUCAGCgGCgCGa -3'
miRNA:   3'- -CGU----UGGCGUCGCUCGc-------AGUCGaCG-GC- -5'
24665 3' -58.2 NC_005264.1 + 26436 0.7 0.578543
Target:  5'- -aGACCGCGGaCGGGCGuugUCGGUcGCCa -3'
miRNA:   3'- cgUUGGCGUC-GCUCGC---AGUCGaCGGc -5'
24665 3' -58.2 NC_005264.1 + 88970 0.7 0.598543
Target:  5'- gGCGACgGCGGUGAGC-UCAGUgaCCGg -3'
miRNA:   3'- -CGUUGgCGUCGCUCGcAGUCGacGGC- -5'
24665 3' -58.2 NC_005264.1 + 49847 0.7 0.608582
Target:  5'- aGCAcguacGCCGCAGCcuucuGGCGg-AGCUGCUGa -3'
miRNA:   3'- -CGU-----UGGCGUCGc----UCGCagUCGACGGC- -5'
24665 3' -58.2 NC_005264.1 + 101355 0.7 0.608582
Target:  5'- -aGACCGCGGgGcGCGUCGGCgcGCUa -3'
miRNA:   3'- cgUUGGCGUCgCuCGCAGUCGa-CGGc -5'
24665 3' -58.2 NC_005264.1 + 95468 0.7 0.608582
Target:  5'- gGCGGgCGCAGCGAGCGcgGGC-GCUa -3'
miRNA:   3'- -CGUUgGCGUCGCUCGCagUCGaCGGc -5'
24665 3' -58.2 NC_005264.1 + 16480 0.7 0.618638
Target:  5'- cGCAGCCGCGGUGGccuGCGgggucgaGGCacGCCGg -3'
miRNA:   3'- -CGUUGGCGUCGCU---CGCag-----UCGa-CGGC- -5'
24665 3' -58.2 NC_005264.1 + 139104 0.7 0.628704
Target:  5'- cGCGGCUGCuGCuGAGCGgCGGCgugUGCCc -3'
miRNA:   3'- -CGUUGGCGuCG-CUCGCaGUCG---ACGGc -5'
24665 3' -58.2 NC_005264.1 + 3994 0.7 0.628704
Target:  5'- uCGGCgGCGGCGGGUucucuGUCGGCUGaCUGu -3'
miRNA:   3'- cGUUGgCGUCGCUCG-----CAGUCGAC-GGC- -5'
24665 3' -58.2 NC_005264.1 + 127406 0.69 0.638773
Target:  5'- gGC-GCCGgAcGCGGcGCGUUgaAGCUGCCGg -3'
miRNA:   3'- -CGuUGGCgU-CGCU-CGCAG--UCGACGGC- -5'
24665 3' -58.2 NC_005264.1 + 8379 0.69 0.638773
Target:  5'- gGC-GCCGgAcGCGGcGCGUUgaAGCUGCCGg -3'
miRNA:   3'- -CGuUGGCgU-CGCU-CGCAG--UCGACGGC- -5'
24665 3' -58.2 NC_005264.1 + 153881 0.69 0.648836
Target:  5'- uGguGCUGCAGCGAGUugGcCGGCccgaagGCCGa -3'
miRNA:   3'- -CguUGGCGUCGCUCG--CaGUCGa-----CGGC- -5'
24665 3' -58.2 NC_005264.1 + 124303 0.69 0.648836
Target:  5'- cGCGGCCGgaCGGCgGGGCGgCGGCUGaCCc -3'
miRNA:   3'- -CGUUGGC--GUCG-CUCGCaGUCGAC-GGc -5'
24665 3' -58.2 NC_005264.1 + 5276 0.69 0.648836
Target:  5'- cGCGGCCGgaCGGCgGGGCGgCGGCUGaCCc -3'
miRNA:   3'- -CGUUGGC--GUCG-CUCGCaGUCGAC-GGc -5'
24665 3' -58.2 NC_005264.1 + 100283 0.69 0.658887
Target:  5'- ----gCGCAGCGGGC-UCGGCuUGCUGg -3'
miRNA:   3'- cguugGCGUCGCUCGcAGUCG-ACGGC- -5'
24665 3' -58.2 NC_005264.1 + 154825 0.69 0.668917
Target:  5'- cGCcgUCGUGGCGGGCG-CcuCUGCCGg -3'
miRNA:   3'- -CGuuGGCGUCGCUCGCaGucGACGGC- -5'
24665 3' -58.2 NC_005264.1 + 102215 0.69 0.668917
Target:  5'- aGCuGCUGCuccugcGCGAGC--CGGCUGCCGc -3'
miRNA:   3'- -CGuUGGCGu-----CGCUCGcaGUCGACGGC- -5'
24665 3' -58.2 NC_005264.1 + 35799 0.69 0.668917
Target:  5'- cGCcgUCGUGGCGGGCG-CcuCUGCCGg -3'
miRNA:   3'- -CGuuGGCGUCGCUCGCaGucGACGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.