miRNA display CGI


Results 21 - 40 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24665 3' -58.2 NC_005264.1 + 136335 0.66 0.825517
Target:  5'- -aGACCGCGGggagagauauuauaCGGGCG-CugggcGCUGCCGg -3'
miRNA:   3'- cgUUGGCGUC--------------GCUCGCaGu----CGACGGC- -5'
24665 3' -58.2 NC_005264.1 + 54229 0.66 0.819639
Target:  5'- gGCGGCCGguGCGuucacGCua-GGCUGCUa -3'
miRNA:   3'- -CGUUGGCguCGCu----CGcagUCGACGGc -5'
24665 3' -58.2 NC_005264.1 + 125462 0.66 0.819639
Target:  5'- ---cUCGCGGCG-GCGUC-GCUGgCGg -3'
miRNA:   3'- cguuGGCGUCGCuCGCAGuCGACgGC- -5'
24665 3' -58.2 NC_005264.1 + 67416 0.66 0.819639
Target:  5'- gGCAACCGCA--GAGCaaacugCGGCUGgCGa -3'
miRNA:   3'- -CGUUGGCGUcgCUCGca----GUCGACgGC- -5'
24665 3' -58.2 NC_005264.1 + 151864 0.66 0.819639
Target:  5'- gGCGACaCGUGGgGGGCGUCuucgcgggcaucAGCUGUa- -3'
miRNA:   3'- -CGUUG-GCGUCgCUCGCAG------------UCGACGgc -5'
24665 3' -58.2 NC_005264.1 + 129386 0.66 0.819639
Target:  5'- -aGACCGUGGCGGGaauuaauaGUCAGC-GCgGg -3'
miRNA:   3'- cgUUGGCGUCGCUCg-------CAGUCGaCGgC- -5'
24665 3' -58.2 NC_005264.1 + 6435 0.66 0.819639
Target:  5'- ---cUCGCGGCG-GCGUC-GCUGgCGg -3'
miRNA:   3'- cguuGGCGUCGCuCGCAGuCGACgGC- -5'
24665 3' -58.2 NC_005264.1 + 52690 0.66 0.819639
Target:  5'- -aAGCCGCGGCGGGUuUC-GCcGCCc -3'
miRNA:   3'- cgUUGGCGUCGCUCGcAGuCGaCGGc -5'
24665 3' -58.2 NC_005264.1 + 132892 0.66 0.819639
Target:  5'- gGCA--UGCuGUGAGCGaaGGCUGCCc -3'
miRNA:   3'- -CGUugGCGuCGCUCGCagUCGACGGc -5'
24665 3' -58.2 NC_005264.1 + 4607 0.66 0.811963
Target:  5'- aGC-GCCGCGGCG-GCGUaGGCgcguucucgaaaaucGCCGg -3'
miRNA:   3'- -CGuUGGCGUCGCuCGCAgUCGa--------------CGGC- -5'
24665 3' -58.2 NC_005264.1 + 123634 0.66 0.811963
Target:  5'- aGC-GCCGCGGCG-GCGUaGGCgcguucucgaaaaucGCCGg -3'
miRNA:   3'- -CGuUGGCGUCGCuCGCAgUCGa--------------CGGC- -5'
24665 3' -58.2 NC_005264.1 + 103719 0.66 0.811103
Target:  5'- aGCGGCggCGCGGCaucAGCGgCGGCgGCCGc -3'
miRNA:   3'- -CGUUG--GCGUCGc--UCGCaGUCGaCGGC- -5'
24665 3' -58.2 NC_005264.1 + 160943 0.66 0.811103
Target:  5'- cGCAGUCGCGGCGGG-GUCuguAGCuuucUGCCa -3'
miRNA:   3'- -CGUUGGCGUCGCUCgCAG---UCG----ACGGc -5'
24665 3' -58.2 NC_005264.1 + 158119 0.66 0.811103
Target:  5'- uCGGCgGgCAGCG-GCGUCuggaccAGCUGCUGu -3'
miRNA:   3'- cGUUGgC-GUCGCuCGCAG------UCGACGGC- -5'
24665 3' -58.2 NC_005264.1 + 150059 0.66 0.811103
Target:  5'- cGguGCCGCcuAGCGGuCGUgCGGCUGCg- -3'
miRNA:   3'- -CguUGGCG--UCGCUcGCA-GUCGACGgc -5'
24665 3' -58.2 NC_005264.1 + 31032 0.66 0.811103
Target:  5'- cGguGCCGCcuAGCGGuCGUgCGGCUGCg- -3'
miRNA:   3'- -CguUGGCG--UCGCUcGCA-GUCGACGgc -5'
24665 3' -58.2 NC_005264.1 + 39092 0.66 0.811103
Target:  5'- uCGGCgGgCAGCG-GCGUCuggaccAGCUGCUGu -3'
miRNA:   3'- cGUUGgC-GUCGCuCGCAG------UCGACGGC- -5'
24665 3' -58.2 NC_005264.1 + 41916 0.66 0.811103
Target:  5'- cGCAGUCGCGGCGGG-GUCuguAGCuuucUGCCa -3'
miRNA:   3'- -CGUUGGCGUCGCUCgCAG---UCG----ACGGc -5'
24665 3' -58.2 NC_005264.1 + 74290 0.66 0.811103
Target:  5'- gGCAGCauuaGCGGCGgucuGGCGcgCGGCaugGCCa -3'
miRNA:   3'- -CGUUGg---CGUCGC----UCGCa-GUCGa--CGGc -5'
24665 3' -58.2 NC_005264.1 + 83224 0.66 0.811103
Target:  5'- -gGGCCGUugcgcGUGGGCGUCuaGGCcGCCGc -3'
miRNA:   3'- cgUUGGCGu----CGCUCGCAG--UCGaCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.