Results 41 - 60 of 144 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24665 | 3' | -58.2 | NC_005264.1 | + | 96140 | 0.66 | 0.811103 |
Target: 5'- cGCAACaCGgAGCGGGCcGUUAgGgaGCUGg -3' miRNA: 3'- -CGUUG-GCgUCGCUCG-CAGU-CgaCGGC- -5' |
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24665 | 3' | -58.2 | NC_005264.1 | + | 103719 | 0.66 | 0.811103 |
Target: 5'- aGCGGCggCGCGGCaucAGCGgCGGCgGCCGc -3' miRNA: 3'- -CGUUG--GCGUCGc--UCGCaGUCGaCGGC- -5' |
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24665 | 3' | -58.2 | NC_005264.1 | + | 106753 | 0.66 | 0.811103 |
Target: 5'- uGCGGCaCGCAcaagacGCG-GCGUCAGCgGgCGu -3' miRNA: 3'- -CGUUG-GCGU------CGCuCGCAGUCGaCgGC- -5' |
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24665 | 3' | -58.2 | NC_005264.1 | + | 31032 | 0.66 | 0.811103 |
Target: 5'- cGguGCCGCcuAGCGGuCGUgCGGCUGCg- -3' miRNA: 3'- -CguUGGCG--UCGCUcGCA-GUCGACGgc -5' |
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24665 | 3' | -58.2 | NC_005264.1 | + | 145157 | 0.67 | 0.802409 |
Target: 5'- -gAGCCGCcGCG-GCcUCGGCUGCg- -3' miRNA: 3'- cgUUGGCGuCGCuCGcAGUCGACGgc -5' |
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24665 | 3' | -58.2 | NC_005264.1 | + | 95422 | 0.67 | 0.802409 |
Target: 5'- cCAGCCGCAGUuuGCucugCGGUUGCCc -3' miRNA: 3'- cGUUGGCGUCGcuCGca--GUCGACGGc -5' |
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24665 | 3' | -58.2 | NC_005264.1 | + | 138 | 0.67 | 0.802409 |
Target: 5'- gGCGGCCGCcuuaacGCcGGCGcgCAGCgcGCCGa -3' miRNA: 3'- -CGUUGGCGu-----CGcUCGCa-GUCGa-CGGC- -5' |
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24665 | 3' | -58.2 | NC_005264.1 | + | 119165 | 0.67 | 0.802409 |
Target: 5'- gGCGGCCGCcuuaacGCcGGCGcgCAGCgcGCCGa -3' miRNA: 3'- -CGUUGGCGu-----CGcUCGCa-GUCGa-CGGC- -5' |
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24665 | 3' | -58.2 | NC_005264.1 | + | 37543 | 0.67 | 0.802409 |
Target: 5'- uGCAAgCGUcaGGCGaAGCGaCAGCgcGCCGc -3' miRNA: 3'- -CGUUgGCG--UCGC-UCGCaGUCGa-CGGC- -5' |
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24665 | 3' | -58.2 | NC_005264.1 | + | 97772 | 0.67 | 0.79712 |
Target: 5'- -uGACCcucacggauggauggGCGGCGcGGCGUaaugaguaGGCUGCCGa -3' miRNA: 3'- cgUUGG---------------CGUCGC-UCGCAg-------UCGACGGC- -5' |
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24665 | 3' | -58.2 | NC_005264.1 | + | 62737 | 0.67 | 0.793566 |
Target: 5'- cGCAACCGCGucgucGCuGAGCcccgCGGCcGCCa -3' miRNA: 3'- -CGUUGGCGU-----CG-CUCGca--GUCGaCGGc -5' |
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24665 | 3' | -58.2 | NC_005264.1 | + | 106524 | 0.67 | 0.784582 |
Target: 5'- cGCGACgGCGGC-AGCG-CGGCcGCgGa -3' miRNA: 3'- -CGUUGgCGUCGcUCGCaGUCGaCGgC- -5' |
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24665 | 3' | -58.2 | NC_005264.1 | + | 155256 | 0.67 | 0.784582 |
Target: 5'- aGCAucuCCGCAGCGGcGCGggguaGGCgGCgGg -3' miRNA: 3'- -CGUu--GGCGUCGCU-CGCag---UCGaCGgC- -5' |
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24665 | 3' | -58.2 | NC_005264.1 | + | 120207 | 0.67 | 0.783676 |
Target: 5'- cGCGAUggggguaCGCAGCGgaccgGGCGUCcGCgGCCa -3' miRNA: 3'- -CGUUG-------GCGUCGC-----UCGCAGuCGaCGGc -5' |
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24665 | 3' | -58.2 | NC_005264.1 | + | 1180 | 0.67 | 0.783676 |
Target: 5'- cGCGAUggggguaCGCAGCGgaccgGGCGUCcGCgGCCa -3' miRNA: 3'- -CGUUG-------GCGUCGC-----UCGCAGuCGaCGGc -5' |
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24665 | 3' | -58.2 | NC_005264.1 | + | 138677 | 0.67 | 0.775465 |
Target: 5'- cGCGGCCGCAGC-AGCcUCGaCUcGCCa -3' miRNA: 3'- -CGUUGGCGUCGcUCGcAGUcGA-CGGc -5' |
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24665 | 3' | -58.2 | NC_005264.1 | + | 58871 | 0.67 | 0.775465 |
Target: 5'- uCGGCCGUAGgGuGCG-CAGC-GCCa -3' miRNA: 3'- cGUUGGCGUCgCuCGCaGUCGaCGGc -5' |
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24665 | 3' | -58.2 | NC_005264.1 | + | 140782 | 0.67 | 0.775465 |
Target: 5'- cCGGCgGCGGCGcuaccguccaaGGCGUCGGUcugaaGCCGa -3' miRNA: 3'- cGUUGgCGUCGC-----------UCGCAGUCGa----CGGC- -5' |
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24665 | 3' | -58.2 | NC_005264.1 | + | 135946 | 0.67 | 0.775465 |
Target: 5'- gGCGGCCgGgGGCGAGCGaauuacucgCA-CUGCCGc -3' miRNA: 3'- -CGUUGG-CgUCGCUCGCa--------GUcGACGGC- -5' |
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24665 | 3' | -58.2 | NC_005264.1 | + | 98416 | 0.67 | 0.766225 |
Target: 5'- gGCAgacgucaucGCCGUgcccGCG-GCGUCGGCcuugGCCGg -3' miRNA: 3'- -CGU---------UGGCGu---CGCuCGCAGUCGa---CGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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