miRNA display CGI


Results 1 - 20 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24665 3' -58.2 NC_005264.1 + 138 0.67 0.802409
Target:  5'- gGCGGCCGCcuuaacGCcGGCGcgCAGCgcGCCGa -3'
miRNA:   3'- -CGUUGGCGu-----CGcUCGCa-GUCGa-CGGC- -5'
24665 3' -58.2 NC_005264.1 + 1180 0.67 0.783676
Target:  5'- cGCGAUggggguaCGCAGCGgaccgGGCGUCcGCgGCCa -3'
miRNA:   3'- -CGUUG-------GCGUCGC-----UCGCAGuCGaCGGc -5'
24665 3' -58.2 NC_005264.1 + 3540 0.68 0.737846
Target:  5'- cGCGA-CGCGGCG-GCGUCcAGCaucucucgUGCCa -3'
miRNA:   3'- -CGUUgGCGUCGCuCGCAG-UCG--------ACGGc -5'
24665 3' -58.2 NC_005264.1 + 3994 0.7 0.628704
Target:  5'- uCGGCgGCGGCGGGUucucuGUCGGCUGaCUGu -3'
miRNA:   3'- cGUUGgCGUCGCUCG-----CAGUCGAC-GGC- -5'
24665 3' -58.2 NC_005264.1 + 4607 0.66 0.811963
Target:  5'- aGC-GCCGCGGCG-GCGUaGGCgcguucucgaaaaucGCCGg -3'
miRNA:   3'- -CGuUGGCGUCGCuCGCAgUCGa--------------CGGC- -5'
24665 3' -58.2 NC_005264.1 + 5276 0.69 0.648836
Target:  5'- cGCGGCCGgaCGGCgGGGCGgCGGCUGaCCc -3'
miRNA:   3'- -CGUUGGC--GUCG-CUCGCaGUCGAC-GGc -5'
24665 3' -58.2 NC_005264.1 + 6435 0.66 0.819639
Target:  5'- ---cUCGCGGCG-GCGUC-GCUGgCGg -3'
miRNA:   3'- cguuGGCGUCGCuCGCAGuCGACgGC- -5'
24665 3' -58.2 NC_005264.1 + 6872 0.71 0.539035
Target:  5'- cCGACgGCAGCcaGAGCGUCcGCgaGCCGc -3'
miRNA:   3'- cGUUGgCGUCG--CUCGCAGuCGa-CGGC- -5'
24665 3' -58.2 NC_005264.1 + 7851 0.68 0.718466
Target:  5'- aGCuACCGCuagauugugggGGCG-GCGUCGGC-GCCc -3'
miRNA:   3'- -CGuUGGCG-----------UCGCuCGCAGUCGaCGGc -5'
24665 3' -58.2 NC_005264.1 + 7951 0.71 0.558691
Target:  5'- aCGGCCGCGGCGucuuUGUC-GCUGCCu -3'
miRNA:   3'- cGUUGGCGUCGCuc--GCAGuCGACGGc -5'
24665 3' -58.2 NC_005264.1 + 8379 0.69 0.638773
Target:  5'- gGC-GCCGgAcGCGGcGCGUUgaAGCUGCCGg -3'
miRNA:   3'- -CGuUGGCgU-CGCU-CGCAG--UCGACGGC- -5'
24665 3' -58.2 NC_005264.1 + 8776 0.68 0.698801
Target:  5'- gGCGAa--CGGCGGGCGUCGGCcaggacgGCCa -3'
miRNA:   3'- -CGUUggcGUCGCUCGCAGUCGa------CGGc -5'
24665 3' -58.2 NC_005264.1 + 10071 0.69 0.682909
Target:  5'- uGCAGCCGCGGCGgaaucucccgccgggGGCaUC-GCgGCCGu -3'
miRNA:   3'- -CGUUGGCGUCGC---------------UCGcAGuCGaCGGC- -5'
24665 3' -58.2 NC_005264.1 + 12458 0.67 0.762496
Target:  5'- -aGGCC-CGGCaGGCGUCAGCgaguucuugcgugGCCGg -3'
miRNA:   3'- cgUUGGcGUCGcUCGCAGUCGa------------CGGC- -5'
24665 3' -58.2 NC_005264.1 + 13426 0.67 0.754985
Target:  5'- cGCGACCGCcgccgccgagacGCGAcGCGgCGGC-GCCGa -3'
miRNA:   3'- -CGUUGGCGu-----------CGCU-CGCaGUCGaCGGC- -5'
24665 3' -58.2 NC_005264.1 + 15380 0.68 0.712593
Target:  5'- cGguGCCGCAGUG-GCGaUAGCUugagguugggucgcgGCCGg -3'
miRNA:   3'- -CguUGGCGUCGCuCGCaGUCGA---------------CGGC- -5'
24665 3' -58.2 NC_005264.1 + 15483 0.73 0.427432
Target:  5'- gGCGAUCGCGGCGGGCaUgGGCcugGCCu -3'
miRNA:   3'- -CGUUGGCGUCGCUCGcAgUCGa--CGGc -5'
24665 3' -58.2 NC_005264.1 + 15581 0.69 0.678919
Target:  5'- cGUGGCCaaGCuuGCGGGCG-CAGCUGCgGc -3'
miRNA:   3'- -CGUUGG--CGu-CGCUCGCaGUCGACGgC- -5'
24665 3' -58.2 NC_005264.1 + 16072 0.66 0.844229
Target:  5'- -gAACCGCcGCGcGGCGcuugCuGUUGCCGg -3'
miRNA:   3'- cgUUGGCGuCGC-UCGCa---GuCGACGGC- -5'
24665 3' -58.2 NC_005264.1 + 16480 0.7 0.618638
Target:  5'- cGCAGCCGCGGUGGccuGCGgggucgaGGCacGCCGg -3'
miRNA:   3'- -CGUUGGCGUCGCU---CGCag-----UCGa-CGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.