miRNA display CGI


Results 21 - 40 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24665 3' -58.2 NC_005264.1 + 17693 0.68 0.728196
Target:  5'- -aGGCCGCGGCGGcucGUGUCGGgUGUUa -3'
miRNA:   3'- cgUUGGCGUCGCU---CGCAGUCgACGGc -5'
24665 3' -58.2 NC_005264.1 + 17864 0.66 0.82801
Target:  5'- uCGACCGC-GUGAGCaaUCGGCggGCUGa -3'
miRNA:   3'- cGUUGGCGuCGCUCGc-AGUCGa-CGGC- -5'
24665 3' -58.2 NC_005264.1 + 20062 0.71 0.557703
Target:  5'- cGCGGCCccgcGUAGCGAGCaagcaccGUCAGCUcGuCCGa -3'
miRNA:   3'- -CGUUGG----CGUCGCUCG-------CAGUCGA-C-GGC- -5'
24665 3' -58.2 NC_005264.1 + 21515 0.66 0.82801
Target:  5'- cGCcgUCGCAGUGGGCG-CAGgUGUa- -3'
miRNA:   3'- -CGuuGGCGUCGCUCGCaGUCgACGgc -5'
24665 3' -58.2 NC_005264.1 + 22719 0.75 0.323397
Target:  5'- uGCGGCgCGCaAGCGuGUGUCuGCUGCCc -3'
miRNA:   3'- -CGUUG-GCG-UCGCuCGCAGuCGACGGc -5'
24665 3' -58.2 NC_005264.1 + 24178 0.67 0.756869
Target:  5'- uGCGGCCGCGGuCGguaaagucuGGCG-CGG-UGCCGg -3'
miRNA:   3'- -CGUUGGCGUC-GC---------UCGCaGUCgACGGC- -5'
24665 3' -58.2 NC_005264.1 + 26156 0.75 0.328491
Target:  5'- -aGGCCGCGGCGAGgacuuucgcggcacUGUCGGCgggGCCGu -3'
miRNA:   3'- cgUUGGCGUCGCUC--------------GCAGUCGa--CGGC- -5'
24665 3' -58.2 NC_005264.1 + 26436 0.7 0.578543
Target:  5'- -aGACCGCGGaCGGGCGuugUCGGUcGCCa -3'
miRNA:   3'- cgUUGGCGUC-GCUCGC---AGUCGaCGGc -5'
24665 3' -58.2 NC_005264.1 + 27926 0.67 0.754985
Target:  5'- aCGACCGCGGUGuuggcguucugcGCGUCGGUgGUCGu -3'
miRNA:   3'- cGUUGGCGUCGCu-----------CGCAGUCGaCGGC- -5'
24665 3' -58.2 NC_005264.1 + 30350 0.68 0.737846
Target:  5'- aGCAGCUGCccuGCG-GCcacgUGGCUGCCGu -3'
miRNA:   3'- -CGUUGGCGu--CGCuCGca--GUCGACGGC- -5'
24665 3' -58.2 NC_005264.1 + 31032 0.66 0.811103
Target:  5'- cGguGCCGCcuAGCGGuCGUgCGGCUGCg- -3'
miRNA:   3'- -CguUGGCG--UCGCUcGCA-GUCGACGgc -5'
24665 3' -58.2 NC_005264.1 + 34085 0.71 0.568595
Target:  5'- cGCAguuuGCCGCGGCGGGCacaauggcUCAGCgGCgCGa -3'
miRNA:   3'- -CGU----UGGCGUCGCUCGc-------AGUCGaCG-GC- -5'
24665 3' -58.2 NC_005264.1 + 34197 0.68 0.718466
Target:  5'- aGCAGCCGCGGCaugGAGCGcauacUUGGCgUGUCc -3'
miRNA:   3'- -CGUUGGCGUCG---CUCGC-----AGUCG-ACGGc -5'
24665 3' -58.2 NC_005264.1 + 35799 0.69 0.668917
Target:  5'- cGCcgUCGUGGCGGGCG-CcuCUGCCGg -3'
miRNA:   3'- -CGuuGGCGUCGCUCGCaGucGACGGC- -5'
24665 3' -58.2 NC_005264.1 + 36513 0.69 0.678919
Target:  5'- cGCGGCCucgacgaGGCGGGCG-CAGgaGCCa -3'
miRNA:   3'- -CGUUGGcg-----UCGCUCGCaGUCgaCGGc -5'
24665 3' -58.2 NC_005264.1 + 36743 0.66 0.83621
Target:  5'- ---cCCGCAGCGcgacGGCGcCGGCcggcGCCGu -3'
miRNA:   3'- cguuGGCGUCGC----UCGCaGUCGa---CGGC- -5'
24665 3' -58.2 NC_005264.1 + 37543 0.67 0.802409
Target:  5'- uGCAAgCGUcaGGCGaAGCGaCAGCgcGCCGc -3'
miRNA:   3'- -CGUUgGCG--UCGC-UCGCaGUCGa-CGGC- -5'
24665 3' -58.2 NC_005264.1 + 37596 0.72 0.48074
Target:  5'- gGCGGCCGCGGCGGggggucaaaggacGCGUCucGCacgGCCa -3'
miRNA:   3'- -CGUUGGCGUCGCU-------------CGCAGu-CGa--CGGc -5'
24665 3' -58.2 NC_005264.1 + 37976 0.68 0.747406
Target:  5'- aUAACCGCggccaGGCGAGUGgCGGCcaccGCCGc -3'
miRNA:   3'- cGUUGGCG-----UCGCUCGCaGUCGa---CGGC- -5'
24665 3' -58.2 NC_005264.1 + 39092 0.66 0.811103
Target:  5'- uCGGCgGgCAGCG-GCGUCuggaccAGCUGCUGu -3'
miRNA:   3'- cGUUGgC-GUCGCuCGCAG------UCGACGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.