miRNA display CGI


Results 1 - 20 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24665 3' -58.2 NC_005264.1 + 160943 0.66 0.811103
Target:  5'- cGCAGUCGCGGCGGG-GUCuguAGCuuucUGCCa -3'
miRNA:   3'- -CGUUGGCGUCGCUCgCAG---UCG----ACGGc -5'
24665 3' -58.2 NC_005264.1 + 159985 0.83 0.107741
Target:  5'- cGCAGCCGCAGCGGGCGaCGGCgcgaGCgCGa -3'
miRNA:   3'- -CGUUGGCGUCGCUCGCaGUCGa---CG-GC- -5'
24665 3' -58.2 NC_005264.1 + 159822 0.68 0.737846
Target:  5'- uGCaAACUGCGGgGGGCGcuggaugaUUAGCgccgGCCGg -3'
miRNA:   3'- -CG-UUGGCGUCgCUCGC--------AGUCGa---CGGC- -5'
24665 3' -58.2 NC_005264.1 + 159777 0.66 0.82801
Target:  5'- cCAGUCGCGGCGAGa--CAGCgUGCCa -3'
miRNA:   3'- cGUUGGCGUCGCUCgcaGUCG-ACGGc -5'
24665 3' -58.2 NC_005264.1 + 158119 0.66 0.811103
Target:  5'- uCGGCgGgCAGCG-GCGUCuggaccAGCUGCUGu -3'
miRNA:   3'- cGUUGgC-GUCGCuCGCAG------UCGACGGC- -5'
24665 3' -58.2 NC_005264.1 + 157003 0.68 0.747406
Target:  5'- aUAACCGCggccaGGCGAGUGgCGGCcaccGCCGc -3'
miRNA:   3'- cGUUGGCG-----UCGCUCGCaGUCGa---CGGC- -5'
24665 3' -58.2 NC_005264.1 + 156623 0.72 0.48074
Target:  5'- gGCGGCCGCGGCGGggggucaaaggacGCGUCucGCacgGCCa -3'
miRNA:   3'- -CGUUGGCGUCGCU-------------CGCAGu-CGa--CGGc -5'
24665 3' -58.2 NC_005264.1 + 155769 0.66 0.83621
Target:  5'- ---cCCGCAGCGcgacGGCGcCGGCcggcGCCGu -3'
miRNA:   3'- cguuGGCGUCGC----UCGCaGUCGa---CGGC- -5'
24665 3' -58.2 NC_005264.1 + 155480 0.68 0.698801
Target:  5'- -aAACCGCGGCGGcCGcCAGauuuUGCCGg -3'
miRNA:   3'- cgUUGGCGUCGCUcGCaGUCg---ACGGC- -5'
24665 3' -58.2 NC_005264.1 + 155256 0.67 0.784582
Target:  5'- aGCAucuCCGCAGCGGcGCGggguaGGCgGCgGg -3'
miRNA:   3'- -CGUu--GGCGUCGCU-CGCag---UCGaCGgC- -5'
24665 3' -58.2 NC_005264.1 + 154825 0.69 0.668917
Target:  5'- cGCcgUCGUGGCGGGCG-CcuCUGCCGg -3'
miRNA:   3'- -CGuuGGCGUCGCUCGCaGucGACGGC- -5'
24665 3' -58.2 NC_005264.1 + 153881 0.69 0.648836
Target:  5'- uGguGCUGCAGCGAGUugGcCGGCccgaagGCCGa -3'
miRNA:   3'- -CguUGGCGUCGCUCG--CaGUCGa-----CGGC- -5'
24665 3' -58.2 NC_005264.1 + 153112 0.71 0.568595
Target:  5'- cGCAguuuGCCGCGGCGGGCacaauggcUCAGCgGCgCGa -3'
miRNA:   3'- -CGU----UGGCGUCGCUCGc-------AGUCGaCG-GC- -5'
24665 3' -58.2 NC_005264.1 + 151864 0.66 0.819639
Target:  5'- gGCGACaCGUGGgGGGCGUCuucgcgggcaucAGCUGUa- -3'
miRNA:   3'- -CGUUG-GCGUCgCUCGCAG------------UCGACGgc -5'
24665 3' -58.2 NC_005264.1 + 150059 0.66 0.811103
Target:  5'- cGguGCCGCcuAGCGGuCGUgCGGCUGCg- -3'
miRNA:   3'- -CguUGGCG--UCGCUcGCA-GUCGACGgc -5'
24665 3' -58.2 NC_005264.1 + 146821 0.66 0.83621
Target:  5'- uGCAcggaGgCGCGGCGGuCGUCGcCUGCCa -3'
miRNA:   3'- -CGU----UgGCGUCGCUcGCAGUcGACGGc -5'
24665 3' -58.2 NC_005264.1 + 145480 0.66 0.844229
Target:  5'- -aGACCGCGcCGc-CGcCAGCUGCCGc -3'
miRNA:   3'- cgUUGGCGUcGCucGCaGUCGACGGC- -5'
24665 3' -58.2 NC_005264.1 + 145157 0.67 0.802409
Target:  5'- -gAGCCGCcGCG-GCcUCGGCUGCg- -3'
miRNA:   3'- cgUUGGCGuCGCuCGcAGUCGACGgc -5'
24665 3' -58.2 NC_005264.1 + 140782 0.67 0.775465
Target:  5'- cCGGCgGCGGCGcuaccguccaaGGCGUCGGUcugaaGCCGa -3'
miRNA:   3'- cGUUGgCGUCGC-----------UCGCAGUCGa----CGGC- -5'
24665 3' -58.2 NC_005264.1 + 139104 0.7 0.628704
Target:  5'- cGCGGCUGCuGCuGAGCGgCGGCgugUGCCc -3'
miRNA:   3'- -CGUUGGCGuCG-CUCGCaGUCG---ACGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.