miRNA display CGI


Results 1 - 20 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24665 3' -58.2 NC_005264.1 + 101693 1.11 0.00128
Target:  5'- cGCAACCGCAGCGAGCGUCAGCUGCCGg -3'
miRNA:   3'- -CGUUGGCGUCGCUCGCAGUCGACGGC- -5'
24665 3' -58.2 NC_005264.1 + 49847 0.7 0.608582
Target:  5'- aGCAcguacGCCGCAGCcuucuGGCGg-AGCUGCUGa -3'
miRNA:   3'- -CGU-----UGGCGUCGc----UCGCagUCGACGGC- -5'
24665 3' -58.2 NC_005264.1 + 127406 0.69 0.638773
Target:  5'- gGC-GCCGgAcGCGGcGCGUUgaAGCUGCCGg -3'
miRNA:   3'- -CGuUGGCgU-CGCU-CGCAG--UCGACGGC- -5'
24665 3' -58.2 NC_005264.1 + 87747 0.65 0.848952
Target:  5'- cGCGACUGCgucaaguAGCGcAcacccugccucuccGCGUCAGCUacuccGCCGa -3'
miRNA:   3'- -CGUUGGCG-------UCGC-U--------------CGCAGUCGA-----CGGC- -5'
24665 3' -58.2 NC_005264.1 + 66537 0.74 0.376977
Target:  5'- aCGACCGCGuuGCGGGCGUCGGCgauuuCCa -3'
miRNA:   3'- cGUUGGCGU--CGCUCGCAGUCGac---GGc -5'
24665 3' -58.2 NC_005264.1 + 15483 0.73 0.427432
Target:  5'- gGCGAUCGCGGCGGGCaUgGGCcugGCCu -3'
miRNA:   3'- -CGUUGGCGUCGCUCGcAgUCGa--CGGc -5'
24665 3' -58.2 NC_005264.1 + 156623 0.72 0.48074
Target:  5'- gGCGGCCGCGGCGGggggucaaaggacGCGUCucGCacgGCCa -3'
miRNA:   3'- -CGUUGGCGUCGCU-------------CGCAGu-CGa--CGGc -5'
24665 3' -58.2 NC_005264.1 + 118047 0.72 0.481672
Target:  5'- --uGCCGCGGCGAccgcgGCGUCGGCaacgaucGCCGc -3'
miRNA:   3'- cguUGGCGUCGCU-----CGCAGUCGa------CGGC- -5'
24665 3' -58.2 NC_005264.1 + 6872 0.71 0.539035
Target:  5'- cCGACgGCAGCcaGAGCGUCcGCgaGCCGc -3'
miRNA:   3'- cGUUGgCGUCG--CUCGCAGuCGa-CGGC- -5'
24665 3' -58.2 NC_005264.1 + 88970 0.7 0.598543
Target:  5'- gGCGACgGCGGUGAGC-UCAGUgaCCGg -3'
miRNA:   3'- -CGUUGgCGUCGCUCGcAGUCGacGGC- -5'
24665 3' -58.2 NC_005264.1 + 75090 0.71 0.558691
Target:  5'- cGCGgcGCUGCGGCaGGCGcCGGC-GCCGa -3'
miRNA:   3'- -CGU--UGGCGUCGcUCGCaGUCGaCGGC- -5'
24665 3' -58.2 NC_005264.1 + 94672 0.72 0.510974
Target:  5'- cGUAGCCGCGGCGGGCG-CcGCaacguucacauaacgGCCGu -3'
miRNA:   3'- -CGUUGGCGUCGCUCGCaGuCGa--------------CGGC- -5'
24665 3' -58.2 NC_005264.1 + 159985 0.83 0.107741
Target:  5'- cGCAGCCGCAGCGGGCGaCGGCgcgaGCgCGa -3'
miRNA:   3'- -CGUUGGCGUCGCUCGCaGUCGa---CG-GC- -5'
24665 3' -58.2 NC_005264.1 + 7951 0.71 0.558691
Target:  5'- aCGGCCGCGGCGucuuUGUC-GCUGCCu -3'
miRNA:   3'- cGUUGGCGUCGCuc--GCAGuCGACGGc -5'
24665 3' -58.2 NC_005264.1 + 42060 0.81 0.150167
Target:  5'- cGCGuugcCCGCGGCGcguGGCGUCAGCUgcGCCGg -3'
miRNA:   3'- -CGUu---GGCGUCGC---UCGCAGUCGA--CGGC- -5'
24665 3' -58.2 NC_005264.1 + 93077 0.72 0.510017
Target:  5'- aGgGGCCGCGGCGAccucgGCuucUCAGCUcGCCGa -3'
miRNA:   3'- -CgUUGGCGUCGCU-----CGc--AGUCGA-CGGC- -5'
24665 3' -58.2 NC_005264.1 + 153112 0.71 0.568595
Target:  5'- cGCAguuuGCCGCGGCGGGCacaauggcUCAGCgGCgCGa -3'
miRNA:   3'- -CGU----UGGCGUCGCUCGc-------AGUCGaCG-GC- -5'
24665 3' -58.2 NC_005264.1 + 3994 0.7 0.628704
Target:  5'- uCGGCgGCGGCGGGUucucuGUCGGCUGaCUGu -3'
miRNA:   3'- cGUUGgCGUCGCUCG-----CAGUCGAC-GGC- -5'
24665 3' -58.2 NC_005264.1 + 22719 0.75 0.323397
Target:  5'- uGCGGCgCGCaAGCGuGUGUCuGCUGCCc -3'
miRNA:   3'- -CGUUG-GCG-UCGCuCGCAGuCGACGGc -5'
24665 3' -58.2 NC_005264.1 + 135135 0.73 0.454113
Target:  5'- aGUGugCGCauugagAGCGAGCGUCGGCgaggcagagGCCa -3'
miRNA:   3'- -CGUugGCG------UCGCUCGCAGUCGa--------CGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.