miRNA display CGI


Results 21 - 40 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24665 3' -58.2 NC_005264.1 + 36513 0.69 0.678919
Target:  5'- cGCGGCCucgacgaGGCGGGCG-CAGgaGCCa -3'
miRNA:   3'- -CGUUGGcg-----UCGCUCGCaGUCgaCGGc -5'
24665 3' -58.2 NC_005264.1 + 127406 0.69 0.638773
Target:  5'- gGC-GCCGgAcGCGGcGCGUUgaAGCUGCCGg -3'
miRNA:   3'- -CGuUGGCgU-CGCU-CGCAG--UCGACGGC- -5'
24665 3' -58.2 NC_005264.1 + 94672 0.72 0.510974
Target:  5'- cGUAGCCGCGGCGGGCG-CcGCaacguucacauaacgGCCGu -3'
miRNA:   3'- -CGUUGGCGUCGCUCGCaGuCGa--------------CGGC- -5'
24665 3' -58.2 NC_005264.1 + 22719 0.75 0.323397
Target:  5'- uGCGGCgCGCaAGCGuGUGUCuGCUGCCc -3'
miRNA:   3'- -CGUUG-GCG-UCGCuCGCAGuCGACGGc -5'
24665 3' -58.2 NC_005264.1 + 44635 0.68 0.737846
Target:  5'- cGCGGCCG-AGgGAGUGcugauguagaAGCUGCCGu -3'
miRNA:   3'- -CGUUGGCgUCgCUCGCag--------UCGACGGC- -5'
24665 3' -58.2 NC_005264.1 + 34197 0.68 0.718466
Target:  5'- aGCAGCCGCGGCaugGAGCGcauacUUGGCgUGUCc -3'
miRNA:   3'- -CGUUGGCGUCG---CUCGC-----AGUCG-ACGGc -5'
24665 3' -58.2 NC_005264.1 + 49847 0.7 0.608582
Target:  5'- aGCAcguacGCCGCAGCcuucuGGCGg-AGCUGCUGa -3'
miRNA:   3'- -CGU-----UGGCGUCGc----UCGCagUCGACGGC- -5'
24665 3' -58.2 NC_005264.1 + 42060 0.81 0.150167
Target:  5'- cGCGuugcCCGCGGCGcguGGCGUCAGCUgcGCCGg -3'
miRNA:   3'- -CGUu---GGCGUCGC---UCGCAGUCGA--CGGC- -5'
24665 3' -58.2 NC_005264.1 + 93002 0.68 0.708665
Target:  5'- cGCGGCCGUAGCGGGgG-CAGUcaagGCa- -3'
miRNA:   3'- -CGUUGGCGUCGCUCgCaGUCGa---CGgc -5'
24665 3' -58.2 NC_005264.1 + 159985 0.83 0.107741
Target:  5'- cGCAGCCGCAGCGGGCGaCGGCgcgaGCgCGa -3'
miRNA:   3'- -CGUUGGCGUCGCUCGCaGUCGa---CG-GC- -5'
24665 3' -58.2 NC_005264.1 + 3994 0.7 0.628704
Target:  5'- uCGGCgGCGGCGGGUucucuGUCGGCUGaCUGu -3'
miRNA:   3'- cGUUGgCGUCGCUCG-----CAGUCGAC-GGC- -5'
24665 3' -58.2 NC_005264.1 + 10071 0.69 0.682909
Target:  5'- uGCAGCCGCGGCGgaaucucccgccgggGGCaUC-GCgGCCGu -3'
miRNA:   3'- -CGUUGGCGUCGC---------------UCGcAGuCGaCGGC- -5'
24665 3' -58.2 NC_005264.1 + 7951 0.71 0.558691
Target:  5'- aCGGCCGCGGCGucuuUGUC-GCUGCCu -3'
miRNA:   3'- cGUUGGCGUCGCuc--GCAGuCGACGGc -5'
24665 3' -58.2 NC_005264.1 + 6872 0.71 0.539035
Target:  5'- cCGACgGCAGCcaGAGCGUCcGCgaGCCGc -3'
miRNA:   3'- cGUUGgCGUCG--CUCGCAGuCGa-CGGC- -5'
24665 3' -58.2 NC_005264.1 + 156623 0.72 0.48074
Target:  5'- gGCGGCCGCGGCGGggggucaaaggacGCGUCucGCacgGCCa -3'
miRNA:   3'- -CGUUGGCGUCGCU-------------CGCAGu-CGa--CGGc -5'
24665 3' -58.2 NC_005264.1 + 66537 0.74 0.376977
Target:  5'- aCGACCGCGuuGCGGGCGUCGGCgauuuCCa -3'
miRNA:   3'- cGUUGGCGU--CGCUCGCAGUCGac---GGc -5'
24665 3' -58.2 NC_005264.1 + 79447 0.68 0.747406
Target:  5'- cGCGGCgCGCAGacgaCGAGCGgCAGCUGg-- -3'
miRNA:   3'- -CGUUG-GCGUC----GCUCGCaGUCGACggc -5'
24665 3' -58.2 NC_005264.1 + 122567 0.68 0.737846
Target:  5'- cGCGA-CGCGGCG-GCGUCcAGCaucucucgUGCCa -3'
miRNA:   3'- -CGUUgGCGUCGCuCGCAG-UCG--------ACGGc -5'
24665 3' -58.2 NC_005264.1 + 17693 0.68 0.728196
Target:  5'- -aGGCCGCGGCGGcucGUGUCGGgUGUUa -3'
miRNA:   3'- cgUUGGCGUCGCU---CGCAGUCgACGGc -5'
24665 3' -58.2 NC_005264.1 + 79334 0.68 0.718466
Target:  5'- uGCGugCGUAGCGuGCG-C-GCUGCUc -3'
miRNA:   3'- -CGUugGCGUCGCuCGCaGuCGACGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.