miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24665 5' -55.3 NC_005264.1 + 60529 0.66 0.925886
Target:  5'- aAUCGGCGCagccauuGCGCUcUGgCACGCCUg -3'
miRNA:   3'- -UAGUCGUGcu-----UGUGA-ACgGUGCGGGu -5'
24665 5' -55.3 NC_005264.1 + 62688 0.66 0.925886
Target:  5'- cGUCAGCGCGAagaACGCgUGCUACcugcguaucgGCCgCGa -3'
miRNA:   3'- -UAGUCGUGCU---UGUGaACGGUG----------CGG-GU- -5'
24665 5' -55.3 NC_005264.1 + 54610 0.66 0.925886
Target:  5'- cUCGGCGCGugcggGACAUcgGCCACGUUa- -3'
miRNA:   3'- uAGUCGUGC-----UUGUGaaCGGUGCGGgu -5'
24665 5' -55.3 NC_005264.1 + 35010 0.66 0.920304
Target:  5'- -gCGGCGCucgaagagGAGCGCUggccguccugGCCgACGCCCGc -3'
miRNA:   3'- uaGUCGUG--------CUUGUGAa---------CGG-UGCGGGU- -5'
24665 5' -55.3 NC_005264.1 + 58274 0.66 0.920304
Target:  5'- -gCGGCAUG-GCGCUUGC-GCGCaCCGa -3'
miRNA:   3'- uaGUCGUGCuUGUGAACGgUGCG-GGU- -5'
24665 5' -55.3 NC_005264.1 + 101600 0.66 0.920304
Target:  5'- cGUgAGCugGAGCGC--GCCAuCGCCa- -3'
miRNA:   3'- -UAgUCGugCUUGUGaaCGGU-GCGGgu -5'
24665 5' -55.3 NC_005264.1 + 30064 0.66 0.920304
Target:  5'- aAUUAGCcccuCGucgGCGCc-GCCGCGCCCGg -3'
miRNA:   3'- -UAGUCGu---GCu--UGUGaaCGGUGCGGGU- -5'
24665 5' -55.3 NC_005264.1 + 154037 0.66 0.920304
Target:  5'- -gCGGCGCucgaagagGAGCGCUggccguccugGCCgACGCCCGc -3'
miRNA:   3'- uaGUCGUG--------CUUGUGAa---------CGG-UGCGGGU- -5'
24665 5' -55.3 NC_005264.1 + 33280 0.66 0.920304
Target:  5'- gAUCGGUgccACGAcCACgcgGCgACGCCUAa -3'
miRNA:   3'- -UAGUCG---UGCUuGUGaa-CGgUGCGGGU- -5'
24665 5' -55.3 NC_005264.1 + 47951 0.66 0.918002
Target:  5'- cUCGGCACGAGCGuggggaaggugGCCGaucCGCCUAg -3'
miRNA:   3'- uAGUCGUGCUUGUgaa--------CGGU---GCGGGU- -5'
24665 5' -55.3 NC_005264.1 + 59093 0.66 0.915069
Target:  5'- cUCAGCAUGAACcuaagcaugGCggccgccgccgcugaUGCCGCGCCg- -3'
miRNA:   3'- uAGUCGUGCUUG---------UGa--------------ACGGUGCGGgu -5'
24665 5' -55.3 NC_005264.1 + 42757 0.66 0.914475
Target:  5'- gGUgGGCACGAcuccCGCUaGCCGgCGUCCGc -3'
miRNA:   3'- -UAgUCGUGCUu---GUGAaCGGU-GCGGGU- -5'
24665 5' -55.3 NC_005264.1 + 24418 0.66 0.914475
Target:  5'- -gCGGCGCGuuaAACAC--GCC-CGCCCGg -3'
miRNA:   3'- uaGUCGUGC---UUGUGaaCGGuGCGGGU- -5'
24665 5' -55.3 NC_005264.1 + 130958 0.66 0.914475
Target:  5'- gGUCGccGCugGGGugaaagucCACUUGCCugacgaggucGCGCCCAu -3'
miRNA:   3'- -UAGU--CGugCUU--------GUGAACGG----------UGCGGGU- -5'
24665 5' -55.3 NC_005264.1 + 24710 0.66 0.914475
Target:  5'- gGUCGGUAUGAGguCUggcGUUACGCCUAc -3'
miRNA:   3'- -UAGUCGUGCUUguGAa--CGGUGCGGGU- -5'
24665 5' -55.3 NC_005264.1 + 29283 0.66 0.912678
Target:  5'- cUguGCGCGGGCGCgUGCCucgacguuuucuuuGCGCCa- -3'
miRNA:   3'- uAguCGUGCUUGUGaACGG--------------UGCGGgu -5'
24665 5' -55.3 NC_005264.1 + 62935 0.66 0.9084
Target:  5'- ---uGCGCGGcCGCaaGCCGCGCCUu -3'
miRNA:   3'- uaguCGUGCUuGUGaaCGGUGCGGGu -5'
24665 5' -55.3 NC_005264.1 + 44998 0.66 0.902082
Target:  5'- ---uGCAUGcGCACUccGCCGCGCCUc -3'
miRNA:   3'- uaguCGUGCuUGUGAa-CGGUGCGGGu -5'
24665 5' -55.3 NC_005264.1 + 118598 0.66 0.902082
Target:  5'- -aCAGCACuuGGGCgACUUcGCCGCGCUUg -3'
miRNA:   3'- uaGUCGUG--CUUG-UGAA-CGGUGCGGGu -5'
24665 5' -55.3 NC_005264.1 + 125290 0.66 0.900139
Target:  5'- -gCGGCGCGcugucgcuucgccuGACGCUUGCaagACGCCgCAg -3'
miRNA:   3'- uaGUCGUGC--------------UUGUGAACGg--UGCGG-GU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.