Results 1 - 20 of 93 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24665 | 5' | -55.3 | NC_005264.1 | + | 101729 | 1.06 | 0.004454 |
Target: 5'- cAUCAGCACGAACACUUGCCACGCCCAc -3' miRNA: 3'- -UAGUCGUGCUUGUGAACGGUGCGGGU- -5' |
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24665 | 5' | -55.3 | NC_005264.1 | + | 136446 | 0.79 | 0.261253 |
Target: 5'- --gAGCAUGGGCGCUgagGCCGCGCUCAg -3' miRNA: 3'- uagUCGUGCUUGUGAa--CGGUGCGGGU- -5' |
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24665 | 5' | -55.3 | NC_005264.1 | + | 77264 | 0.78 | 0.294488 |
Target: 5'- -cCAGCACGugguGCACggUGCCGCGCUCGa -3' miRNA: 3'- uaGUCGUGCu---UGUGa-ACGGUGCGGGU- -5' |
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24665 | 5' | -55.3 | NC_005264.1 | + | 108304 | 0.78 | 0.301517 |
Target: 5'- aGUCGGCgGCGAACACUacUGgCAUGCCCGg -3' miRNA: 3'- -UAGUCG-UGCUUGUGA--ACgGUGCGGGU- -5' |
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24665 | 5' | -55.3 | NC_005264.1 | + | 25541 | 0.77 | 0.354333 |
Target: 5'- -gCGGCGCGGacaagGCGCUUGUCGCGCUCGu -3' miRNA: 3'- uaGUCGUGCU-----UGUGAACGGUGCGGGU- -5' |
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24665 | 5' | -55.3 | NC_005264.1 | + | 120295 | 0.74 | 0.517183 |
Target: 5'- -cCGGCGCGAagacGCGCggaaGCUGCGCCCAc -3' miRNA: 3'- uaGUCGUGCU----UGUGaa--CGGUGCGGGU- -5' |
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24665 | 5' | -55.3 | NC_005264.1 | + | 47093 | 0.73 | 0.52717 |
Target: 5'- --uGGCACGGcgagaguauaGCGCUcGCCGCGCCCc -3' miRNA: 3'- uagUCGUGCU----------UGUGAaCGGUGCGGGu -5' |
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24665 | 5' | -55.3 | NC_005264.1 | + | 99143 | 0.72 | 0.58838 |
Target: 5'- uUCucGCACGGgAC-CUUGCCGCGCCUg -3' miRNA: 3'- uAGu-CGUGCU-UGuGAACGGUGCGGGu -5' |
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24665 | 5' | -55.3 | NC_005264.1 | + | 109474 | 0.72 | 0.598736 |
Target: 5'- cGUC-GCGCaucACGCUUGCCACGCCg- -3' miRNA: 3'- -UAGuCGUGcu-UGUGAACGGUGCGGgu -5' |
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24665 | 5' | -55.3 | NC_005264.1 | + | 139796 | 0.71 | 0.640339 |
Target: 5'- --aAGCACGAACGCgUGCCGuCGgCCGu -3' miRNA: 3'- uagUCGUGCUUGUGaACGGU-GCgGGU- -5' |
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24665 | 5' | -55.3 | NC_005264.1 | + | 64572 | 0.71 | 0.650744 |
Target: 5'- -cCAGCGCGAACACguccaUUGCgaacguggucauUGCGCCCAu -3' miRNA: 3'- uaGUCGUGCUUGUG-----AACG------------GUGCGGGU- -5' |
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24665 | 5' | -55.3 | NC_005264.1 | + | 152286 | 0.71 | 0.68183 |
Target: 5'- -gCAGCgGCGAACGCgcgauCCGCGCCCc -3' miRNA: 3'- uaGUCG-UGCUUGUGaac--GGUGCGGGu -5' |
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24665 | 5' | -55.3 | NC_005264.1 | + | 33259 | 0.71 | 0.68183 |
Target: 5'- -gCAGCgGCGAACGCgcgauCCGCGCCCc -3' miRNA: 3'- uaGUCG-UGCUUGUGaac--GGUGCGGGu -5' |
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24665 | 5' | -55.3 | NC_005264.1 | + | 49838 | 0.71 | 0.69212 |
Target: 5'- uUguGCGCGAGCACguacGCCGCaGCCUu -3' miRNA: 3'- uAguCGUGCUUGUGaa--CGGUG-CGGGu -5' |
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24665 | 5' | -55.3 | NC_005264.1 | + | 125437 | 0.7 | 0.71152 |
Target: 5'- -cCAGCgACGAGCGauuguugcgguccCUcUGCCGCGCCCu -3' miRNA: 3'- uaGUCG-UGCUUGU-------------GA-ACGGUGCGGGu -5' |
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24665 | 5' | -55.3 | NC_005264.1 | + | 78733 | 0.7 | 0.71152 |
Target: 5'- uUCAGUucgGCGGugAUUUGCCaucagauGCGCCCGc -3' miRNA: 3'- uAGUCG---UGCUugUGAACGG-------UGCGGGU- -5' |
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24665 | 5' | -55.3 | NC_005264.1 | + | 74232 | 0.7 | 0.712535 |
Target: 5'- cUC-GCACGuAGCGCgcugGCCGCGCuCCAg -3' miRNA: 3'- uAGuCGUGC-UUGUGaa--CGGUGCG-GGU- -5' |
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24665 | 5' | -55.3 | NC_005264.1 | + | 75705 | 0.7 | 0.712535 |
Target: 5'- uUCGGCGCGAAgAC-UGgUGCGCCCc -3' miRNA: 3'- uAGUCGUGCUUgUGaACgGUGCGGGu -5' |
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24665 | 5' | -55.3 | NC_005264.1 | + | 3990 | 0.7 | 0.722641 |
Target: 5'- -cCAGCAgGGcgGCACaUGCCuccuCGCCCAc -3' miRNA: 3'- uaGUCGUgCU--UGUGaACGGu---GCGGGU- -5' |
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24665 | 5' | -55.3 | NC_005264.1 | + | 67370 | 0.7 | 0.722641 |
Target: 5'- -gUAGCGCccGCGCUcGCUGCGCCCGc -3' miRNA: 3'- uaGUCGUGcuUGUGAaCGGUGCGGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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