miRNA display CGI


Results 21 - 40 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24665 5' -55.3 NC_005264.1 + 154507 0.66 0.895522
Target:  5'- gGUCuGCGgGGcGCACaUGCCGCGCgCAa -3'
miRNA:   3'- -UAGuCGUgCU-UGUGaACGGUGCGgGU- -5'
24665 5' -55.3 NC_005264.1 + 24514 0.66 0.895522
Target:  5'- uGUCGcGCACGcGCcaugaccacaACUUGCCugcgguGCGCCCGg -3'
miRNA:   3'- -UAGU-CGUGCuUG----------UGAACGG------UGCGGGU- -5'
24665 5' -55.3 NC_005264.1 + 58007 0.66 0.894853
Target:  5'- cUCAGCggccccgGCGGACAggcCgucgUGCgGCGCCCGc -3'
miRNA:   3'- uAGUCG-------UGCUUGU---Ga---ACGgUGCGGGU- -5'
24665 5' -55.3 NC_005264.1 + 80766 0.67 0.888724
Target:  5'- cUCGGCgGCGAAgAuCUUGuCCGCGCUCu -3'
miRNA:   3'- uAGUCG-UGCUUgU-GAAC-GGUGCGGGu -5'
24665 5' -55.3 NC_005264.1 + 148380 0.67 0.888724
Target:  5'- --aAGCACGcgaGAgGCUUGCCGCcauGCCUAu -3'
miRNA:   3'- uagUCGUGC---UUgUGAACGGUG---CGGGU- -5'
24665 5' -55.3 NC_005264.1 + 128435 0.67 0.881693
Target:  5'- cUCGGCucauucccUGAGCuCgaGCCGCGCCCGu -3'
miRNA:   3'- uAGUCGu-------GCUUGuGaaCGGUGCGGGU- -5'
24665 5' -55.3 NC_005264.1 + 117041 0.67 0.881693
Target:  5'- gAUCAGCGCGGcggcccagaccGCAauaGCCgcuccgGCGCCCAu -3'
miRNA:   3'- -UAGUCGUGCU-----------UGUgaaCGG------UGCGGGU- -5'
24665 5' -55.3 NC_005264.1 + 37436 0.67 0.879538
Target:  5'- -gCAGCACGAGCgGCUggucgccgaguucaUGCUGCaGCCCc -3'
miRNA:   3'- uaGUCGUGCUUG-UGA--------------ACGGUG-CGGGu -5'
24665 5' -55.3 NC_005264.1 + 156463 0.67 0.879538
Target:  5'- -gCAGCACGAGCgGCUggucgccgaguucaUGCUGCaGCCCc -3'
miRNA:   3'- uaGUCGUGCUUG-UGA--------------ACGGUG-CGGGu -5'
24665 5' -55.3 NC_005264.1 + 120724 0.67 0.874431
Target:  5'- cUCAGCGC--ACACccUGCCAggUGCCCGu -3'
miRNA:   3'- uAGUCGUGcuUGUGa-ACGGU--GCGGGU- -5'
24665 5' -55.3 NC_005264.1 + 123020 0.67 0.874431
Target:  5'- -gCAGgGCG-GCACaUGCCuccuCGCCCAc -3'
miRNA:   3'- uaGUCgUGCuUGUGaACGGu---GCGGGU- -5'
24665 5' -55.3 NC_005264.1 + 93832 0.67 0.874431
Target:  5'- -aCAGUACGAugGCgacaggGCCGCgggccacugGCCCGc -3'
miRNA:   3'- uaGUCGUGCUugUGaa----CGGUG---------CGGGU- -5'
24665 5' -55.3 NC_005264.1 + 127560 0.67 0.874431
Target:  5'- -aCAGuCAgGAcCACg-GCCGCGCCCGc -3'
miRNA:   3'- uaGUC-GUgCUuGUGaaCGGUGCGGGU- -5'
24665 5' -55.3 NC_005264.1 + 140629 0.67 0.874431
Target:  5'- --aGGCgACGAcucCACUUGCCGCGCacgCCAc -3'
miRNA:   3'- uagUCG-UGCUu--GUGAACGGUGCG---GGU- -5'
24665 5' -55.3 NC_005264.1 + 1697 0.67 0.874431
Target:  5'- cUCAGCGC--ACACccUGCCAggUGCCCGu -3'
miRNA:   3'- uAGUCGUGcuUGUGa-ACGGU--GCGGGU- -5'
24665 5' -55.3 NC_005264.1 + 24417 0.67 0.874431
Target:  5'- -gCAGCGCGAcgcaaaGCACguucucGCCGCuaugGCCCAu -3'
miRNA:   3'- uaGUCGUGCU------UGUGaa----CGGUG----CGGGU- -5'
24665 5' -55.3 NC_005264.1 + 30240 0.67 0.874431
Target:  5'- -cCAGCGCGGcaaaGCggUGCCACGCUg- -3'
miRNA:   3'- uaGUCGUGCUug--UGa-ACGGUGCGGgu -5'
24665 5' -55.3 NC_005264.1 + 136814 0.67 0.866946
Target:  5'- --aAGCugGCGGACGCUUggcgauuacaGCCACGCgCCGa -3'
miRNA:   3'- uagUCG--UGCUUGUGAA----------CGGUGCG-GGU- -5'
24665 5' -55.3 NC_005264.1 + 133644 0.67 0.866946
Target:  5'- ---cGCACGcAACACUUGC-ACGCCa- -3'
miRNA:   3'- uaguCGUGC-UUGUGAACGgUGCGGgu -5'
24665 5' -55.3 NC_005264.1 + 137295 0.67 0.866946
Target:  5'- --gAGCGCGAcaaGCGcCUUGuCCGCGCCg- -3'
miRNA:   3'- uagUCGUGCU---UGU-GAAC-GGUGCGGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.