miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24665 5' -55.3 NC_005264.1 + 1697 0.67 0.874431
Target:  5'- cUCAGCGC--ACACccUGCCAggUGCCCGu -3'
miRNA:   3'- uAGUCGUGcuUGUGa-ACGGU--GCGGGU- -5'
24665 5' -55.3 NC_005264.1 + 3407 0.68 0.843204
Target:  5'- gGUCGGUGCGcgggggaggGACGuaggGCCGCGCCCGc -3'
miRNA:   3'- -UAGUCGUGC---------UUGUgaa-CGGUGCGGGU- -5'
24665 5' -55.3 NC_005264.1 + 3990 0.7 0.722641
Target:  5'- -cCAGCAgGGcgGCACaUGCCuccuCGCCCAc -3'
miRNA:   3'- uaGUCGUgCU--UGUGaACGGu---GCGGGU- -5'
24665 5' -55.3 NC_005264.1 + 15481 0.67 0.850523
Target:  5'- -gCGGCgaucgcgGCGGGCAUggGCCugGCCUg -3'
miRNA:   3'- uaGUCG-------UGCUUGUGaaCGGugCGGGu -5'
24665 5' -55.3 NC_005264.1 + 16082 0.69 0.771768
Target:  5'- -gCGGCGCuuGCugUUGCCGgGUCCGc -3'
miRNA:   3'- uaGUCGUGcuUGugAACGGUgCGGGU- -5'
24665 5' -55.3 NC_005264.1 + 22782 0.7 0.732666
Target:  5'- --gGGCGCGGcgACAC-UGCuCACGCCCc -3'
miRNA:   3'- uagUCGUGCU--UGUGaACG-GUGCGGGu -5'
24665 5' -55.3 NC_005264.1 + 24417 0.67 0.874431
Target:  5'- -gCAGCGCGAcgcaaaGCACguucucGCCGCuaugGCCCAu -3'
miRNA:   3'- uaGUCGUGCU------UGUGaa----CGGUG----CGGGU- -5'
24665 5' -55.3 NC_005264.1 + 24418 0.66 0.914475
Target:  5'- -gCGGCGCGuuaAACAC--GCC-CGCCCGg -3'
miRNA:   3'- uaGUCGUGC---UUGUGaaCGGuGCGGGU- -5'
24665 5' -55.3 NC_005264.1 + 24514 0.66 0.895522
Target:  5'- uGUCGcGCACGcGCcaugaccacaACUUGCCugcgguGCGCCCGg -3'
miRNA:   3'- -UAGU-CGUGCuUG----------UGAACGG------UGCGGGU- -5'
24665 5' -55.3 NC_005264.1 + 24710 0.66 0.914475
Target:  5'- gGUCGGUAUGAGguCUggcGUUACGCCUAc -3'
miRNA:   3'- -UAGUCGUGCUUguGAa--CGGUGCGGGU- -5'
24665 5' -55.3 NC_005264.1 + 25541 0.77 0.354333
Target:  5'- -gCGGCGCGGacaagGCGCUUGUCGCGCUCGu -3'
miRNA:   3'- uaGUCGUGCU-----UGUGAACGGUGCGGGU- -5'
24665 5' -55.3 NC_005264.1 + 28725 0.69 0.771768
Target:  5'- gAUCcGCGCGaAGCACUagucucaGCCuGCGCCCAg -3'
miRNA:   3'- -UAGuCGUGC-UUGUGAa------CGG-UGCGGGU- -5'
24665 5' -55.3 NC_005264.1 + 29283 0.66 0.912678
Target:  5'- cUguGCGCGGGCGCgUGCCucgacguuuucuuuGCGCCa- -3'
miRNA:   3'- uAguCGUGCUUGUGaACGG--------------UGCGGgu -5'
24665 5' -55.3 NC_005264.1 + 30064 0.66 0.920304
Target:  5'- aAUUAGCcccuCGucgGCGCc-GCCGCGCCCGg -3'
miRNA:   3'- -UAGUCGu---GCu--UGUGaaCGGUGCGGGU- -5'
24665 5' -55.3 NC_005264.1 + 30240 0.67 0.874431
Target:  5'- -cCAGCGCGGcaaaGCggUGCCACGCUg- -3'
miRNA:   3'- uaGUCGUGCUug--UGa-ACGGUGCGGgu -5'
24665 5' -55.3 NC_005264.1 + 33259 0.71 0.68183
Target:  5'- -gCAGCgGCGAACGCgcgauCCGCGCCCc -3'
miRNA:   3'- uaGUCG-UGCUUGUGaac--GGUGCGGGu -5'
24665 5' -55.3 NC_005264.1 + 33280 0.66 0.920304
Target:  5'- gAUCGGUgccACGAcCACgcgGCgACGCCUAa -3'
miRNA:   3'- -UAGUCG---UGCUuGUGaa-CGgUGCGGGU- -5'
24665 5' -55.3 NC_005264.1 + 34371 0.68 0.843204
Target:  5'- --aAGCGCGA--ACUUGCCgACGCCa- -3'
miRNA:   3'- uagUCGUGCUugUGAACGG-UGCGGgu -5'
24665 5' -55.3 NC_005264.1 + 35010 0.66 0.920304
Target:  5'- -gCGGCGCucgaagagGAGCGCUggccguccugGCCgACGCCCGc -3'
miRNA:   3'- uaGUCGUG--------CUUGUGAa---------CGG-UGCGGGU- -5'
24665 5' -55.3 NC_005264.1 + 36746 0.68 0.80881
Target:  5'- -gCAGCGCGAcgGCGCcgGCCgGCGCCg- -3'
miRNA:   3'- uaGUCGUGCU--UGUGaaCGG-UGCGGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.