miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24665 5' -55.3 NC_005264.1 + 101729 1.06 0.004454
Target:  5'- cAUCAGCACGAACACUUGCCACGCCCAc -3'
miRNA:   3'- -UAGUCGUGCUUGUGAACGGUGCGGGU- -5'
24665 5' -55.3 NC_005264.1 + 28725 0.69 0.771768
Target:  5'- gAUCcGCGCGaAGCACUagucucaGCCuGCGCCCAg -3'
miRNA:   3'- -UAGuCGUGC-UUGUGAa------CGG-UGCGGGU- -5'
24665 5' -55.3 NC_005264.1 + 73668 0.69 0.790585
Target:  5'- -cCGGgACGAcccUACUUGCCugGCCUg -3'
miRNA:   3'- uaGUCgUGCUu--GUGAACGGugCGGGu -5'
24665 5' -55.3 NC_005264.1 + 62688 0.66 0.925886
Target:  5'- cGUCAGCGCGAagaACGCgUGCUACcugcguaucgGCCgCGa -3'
miRNA:   3'- -UAGUCGUGCU---UGUGaACGGUG----------CGG-GU- -5'
24665 5' -55.3 NC_005264.1 + 99143 0.72 0.58838
Target:  5'- uUCucGCACGGgAC-CUUGCCGCGCCUg -3'
miRNA:   3'- uAGu-CGUGCU-UGuGAACGGUGCGGGu -5'
24665 5' -55.3 NC_005264.1 + 109474 0.72 0.598736
Target:  5'- cGUC-GCGCaucACGCUUGCCACGCCg- -3'
miRNA:   3'- -UAGuCGUGcu-UGUGAACGGUGCGGgu -5'
24665 5' -55.3 NC_005264.1 + 49838 0.71 0.69212
Target:  5'- uUguGCGCGAGCACguacGCCGCaGCCUu -3'
miRNA:   3'- uAguCGUGCUUGUGaa--CGGUG-CGGGu -5'
24665 5' -55.3 NC_005264.1 + 78733 0.7 0.71152
Target:  5'- uUCAGUucgGCGGugAUUUGCCaucagauGCGCCCGc -3'
miRNA:   3'- uAGUCG---UGCUugUGAACGG-------UGCGGGU- -5'
24665 5' -55.3 NC_005264.1 + 143795 0.7 0.731667
Target:  5'- cUUAGuCACGAACGCUuucccgccUGCCguccaucACGCCCGc -3'
miRNA:   3'- uAGUC-GUGCUUGUGA--------ACGG-------UGCGGGU- -5'
24665 5' -55.3 NC_005264.1 + 160002 0.69 0.771768
Target:  5'- -aCGGCGCGAGCGCgaccgGCCcucCGCCa- -3'
miRNA:   3'- uaGUCGUGCUUGUGaa---CGGu--GCGGgu -5'
24665 5' -55.3 NC_005264.1 + 67759 0.7 0.732666
Target:  5'- aAUCAGgGCGu-CGCUUaucGCCAgGCCCAu -3'
miRNA:   3'- -UAGUCgUGCuuGUGAA---CGGUgCGGGU- -5'
24665 5' -55.3 NC_005264.1 + 67370 0.7 0.722641
Target:  5'- -gUAGCGCccGCGCUcGCUGCGCCCGc -3'
miRNA:   3'- uaGUCGUGcuUGUGAaCGGUGCGGGU- -5'
24665 5' -55.3 NC_005264.1 + 136446 0.79 0.261253
Target:  5'- --gAGCAUGGGCGCUgagGCCGCGCUCAg -3'
miRNA:   3'- uagUCGUGCUUGUGAa--CGGUGCGGGU- -5'
24665 5' -55.3 NC_005264.1 + 52908 0.7 0.732666
Target:  5'- gGUCGGCGaaccgccacuuCGAgggGCAUUgcaugGCCGCGCCCGc -3'
miRNA:   3'- -UAGUCGU-----------GCU---UGUGAa----CGGUGCGGGU- -5'
24665 5' -55.3 NC_005264.1 + 108304 0.78 0.301517
Target:  5'- aGUCGGCgGCGAACACUacUGgCAUGCCCGg -3'
miRNA:   3'- -UAGUCG-UGCUUGUGA--ACgGUGCGGGU- -5'
24665 5' -55.3 NC_005264.1 + 75705 0.7 0.712535
Target:  5'- uUCGGCGCGAAgAC-UGgUGCGCCCc -3'
miRNA:   3'- uAGUCGUGCUUgUGaACgGUGCGGGu -5'
24665 5' -55.3 NC_005264.1 + 159415 0.69 0.771768
Target:  5'- -gCAGCGCGGGCGCg-GCCcuACGUCCc -3'
miRNA:   3'- uaGUCGUGCUUGUGaaCGG--UGCGGGu -5'
24665 5' -55.3 NC_005264.1 + 42150 0.69 0.771768
Target:  5'- uGUCGGCGCGAgGC-CUUGUUugGUCCc -3'
miRNA:   3'- -UAGUCGUGCU-UGuGAACGGugCGGGu -5'
24665 5' -55.3 NC_005264.1 + 47093 0.73 0.52717
Target:  5'- --uGGCACGGcgagaguauaGCGCUcGCCGCGCCCc -3'
miRNA:   3'- uagUCGUGCU----------UGUGAaCGGUGCGGGu -5'
24665 5' -55.3 NC_005264.1 + 152286 0.71 0.68183
Target:  5'- -gCAGCgGCGAACGCgcgauCCGCGCCCc -3'
miRNA:   3'- uaGUCG-UGCUUGUGaac--GGUGCGGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.