miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24666 5' -51.7 NC_005264.1 + 76360 0.66 0.992752
Target:  5'- uGCGC-GCAGGCGCGUugguaccCGCUAa-- -3'
miRNA:   3'- -CGCGaCGUCUGUGCAuua----GCGGUacc -5'
24666 5' -51.7 NC_005264.1 + 87127 0.66 0.992752
Target:  5'- cGCGCUGUAcGC-CGaGAUCGUCGcGGu -3'
miRNA:   3'- -CGCGACGUcUGuGCaUUAGCGGUaCC- -5'
24666 5' -51.7 NC_005264.1 + 90902 0.66 0.991794
Target:  5'- gGCGUUGgGGGCACGaucuccugccugcagAG-CGCCAUGa -3'
miRNA:   3'- -CGCGACgUCUGUGCa--------------UUaGCGGUACc -5'
24666 5' -51.7 NC_005264.1 + 107980 0.66 0.991682
Target:  5'- aGCGUgaccGUGGAUGCGggcgGcucccaggucacGUCGCCGUGGu -3'
miRNA:   3'- -CGCGa---CGUCUGUGCa---U------------UAGCGGUACC- -5'
24666 5' -51.7 NC_005264.1 + 71273 0.66 0.991682
Target:  5'- cGUGCUGCAGAagccCGUGuacGUUaCUAUGGa -3'
miRNA:   3'- -CGCGACGUCUgu--GCAU---UAGcGGUACC- -5'
24666 5' -51.7 NC_005264.1 + 138384 0.66 0.991682
Target:  5'- cCGCcGCGGaACAagccAGUCGCUAUGGg -3'
miRNA:   3'- cGCGaCGUC-UGUgca-UUAGCGGUACC- -5'
24666 5' -51.7 NC_005264.1 + 53591 0.66 0.991682
Target:  5'- uGCGUUuuguggcacaGCAG-CGCGUAAUCcGCCAUc- -3'
miRNA:   3'- -CGCGA----------CGUCuGUGCAUUAG-CGGUAcc -5'
24666 5' -51.7 NC_005264.1 + 94635 0.66 0.991568
Target:  5'- cGCGCUGUuuuccguccccauGGAgCACGUA---GCCAUGa -3'
miRNA:   3'- -CGCGACG-------------UCU-GUGCAUuagCGGUACc -5'
24666 5' -51.7 NC_005264.1 + 8710 0.66 0.990489
Target:  5'- cGCuCUGCGcGCGCGUGGcCGCCGUuucGGc -3'
miRNA:   3'- -CGcGACGUcUGUGCAUUaGCGGUA---CC- -5'
24666 5' -51.7 NC_005264.1 + 120219 0.66 0.990489
Target:  5'- aCGCaGCGGACcggGCGUccgCGgCCAUGGc -3'
miRNA:   3'- cGCGaCGUCUG---UGCAuuaGC-GGUACC- -5'
24666 5' -51.7 NC_005264.1 + 44789 0.66 0.990489
Target:  5'- uCGUUGCcGACGcCGcGGUCGCCGcGGc -3'
miRNA:   3'- cGCGACGuCUGU-GCaUUAGCGGUaCC- -5'
24666 5' -51.7 NC_005264.1 + 1192 0.66 0.990489
Target:  5'- aCGCaGCGGACcggGCGUccgCGgCCAUGGc -3'
miRNA:   3'- cGCGaCGUCUG---UGCAuuaGC-GGUACC- -5'
24666 5' -51.7 NC_005264.1 + 6944 0.66 0.990363
Target:  5'- gGCGCagGCAGAUACGUcgaccaccaauacAucuucGUCGUCGUGu -3'
miRNA:   3'- -CGCGa-CGUCUGUGCA-------------U-----UAGCGGUACc -5'
24666 5' -51.7 NC_005264.1 + 93442 0.66 0.989167
Target:  5'- aCGCuuuUGUGGcGCAgGUGGUCGCCGcGGa -3'
miRNA:   3'- cGCG---ACGUC-UGUgCAUUAGCGGUaCC- -5'
24666 5' -51.7 NC_005264.1 + 85633 0.66 0.989167
Target:  5'- uUGCUGCAGcCGC-UAAUgGCCGcgaUGGc -3'
miRNA:   3'- cGCGACGUCuGUGcAUUAgCGGU---ACC- -5'
24666 5' -51.7 NC_005264.1 + 95741 0.66 0.989027
Target:  5'- gGCGCUGgAGACG-------GCCAUGGg -3'
miRNA:   3'- -CGCGACgUCUGUgcauuagCGGUACC- -5'
24666 5' -51.7 NC_005264.1 + 98683 0.66 0.987705
Target:  5'- gGCGCuUGCacaccggccGGAuCGCGg---CGCCGUGGc -3'
miRNA:   3'- -CGCG-ACG---------UCU-GUGCauuaGCGGUACC- -5'
24666 5' -51.7 NC_005264.1 + 143887 0.66 0.987705
Target:  5'- gGCGCgGCGGGCGCaacGUCGaUUGUGGg -3'
miRNA:   3'- -CGCGaCGUCUGUGcauUAGC-GGUACC- -5'
24666 5' -51.7 NC_005264.1 + 20451 0.66 0.987705
Target:  5'- gGCGUagccgGCGGACAgCGg---CGCgCAUGGg -3'
miRNA:   3'- -CGCGa----CGUCUGU-GCauuaGCG-GUACC- -5'
24666 5' -51.7 NC_005264.1 + 158444 0.66 0.987705
Target:  5'- uGCGCUGCucagcgccggAGACAuCGguuUUGCCggGGc -3'
miRNA:   3'- -CGCGACG----------UCUGU-GCauuAGCGGuaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.