Results 21 - 40 of 93 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
24666 | 5' | -51.7 | NC_005264.1 | + | 39417 | 0.66 | 0.987705 |
Target: 5'- uGCGCUGCucagcgccggAGACAuCGguuUUGCCggGGc -3' miRNA: 3'- -CGCGACG----------UCUGU-GCauuAGCGGuaCC- -5' |
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24666 | 5' | -51.7 | NC_005264.1 | + | 98683 | 0.66 | 0.987705 |
Target: 5'- gGCGCuUGCacaccggccGGAuCGCGg---CGCCGUGGc -3' miRNA: 3'- -CGCG-ACG---------UCU-GUGCauuaGCGGUACC- -5' |
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24666 | 5' | -51.7 | NC_005264.1 | + | 95741 | 0.66 | 0.989027 |
Target: 5'- gGCGCUGgAGACG-------GCCAUGGg -3' miRNA: 3'- -CGCGACgUCUGUgcauuagCGGUACC- -5' |
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24666 | 5' | -51.7 | NC_005264.1 | + | 123634 | 0.67 | 0.982196 |
Target: 5'- aGCGCcgcggcggcGUAGGCGCGUucucgaaAAUCGCCG-GGc -3' miRNA: 3'- -CGCGa--------CGUCUGUGCA-------UUAGCGGUaCC- -5' |
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24666 | 5' | -51.7 | NC_005264.1 | + | 24419 | 0.67 | 0.982399 |
Target: 5'- aGCGCgacGCAaaGCACGUucUCGCCGcuaUGGc -3' miRNA: 3'- -CGCGa--CGUc-UGUGCAuuAGCGGU---ACC- -5' |
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24666 | 5' | -51.7 | NC_005264.1 | + | 52196 | 0.67 | 0.982399 |
Target: 5'- uGUGCUGaGGGC-CGUGGggCGCgGUGGc -3' miRNA: 3'- -CGCGACgUCUGuGCAUUa-GCGgUACC- -5' |
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24666 | 5' | -51.7 | NC_005264.1 | + | 30356 | 0.67 | 0.986096 |
Target: 5'- uGCcCUGCGGcCACGUGGcUGCCGUa- -3' miRNA: 3'- -CGcGACGUCuGUGCAUUaGCGGUAcc -5' |
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24666 | 5' | -51.7 | NC_005264.1 | + | 64991 | 0.67 | 0.98433 |
Target: 5'- cCGCUGCGGcgcucUACGUAGUcCGCgAUGa -3' miRNA: 3'- cGCGACGUCu----GUGCAUUA-GCGgUACc -5' |
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24666 | 5' | -51.7 | NC_005264.1 | + | 94616 | 0.67 | 0.980294 |
Target: 5'- cCGCcggcGCGGAUACGUcAUCGCUGaGGa -3' miRNA: 3'- cGCGa---CGUCUGUGCAuUAGCGGUaCC- -5' |
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24666 | 5' | -51.7 | NC_005264.1 | + | 122878 | 0.67 | 0.986096 |
Target: 5'- aCGaCcGCAGACucgcagcCGaGGUCGCCGUGGc -3' miRNA: 3'- cGC-GaCGUCUGu------GCaUUAGCGGUACC- -5' |
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24666 | 5' | -51.7 | NC_005264.1 | + | 101604 | 0.67 | 0.986096 |
Target: 5'- -aGCUGgAG-CGCGccAUCGCCAacgUGGa -3' miRNA: 3'- cgCGACgUCuGUGCauUAGCGGU---ACC- -5' |
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24666 | 5' | -51.7 | NC_005264.1 | + | 82359 | 0.67 | 0.986096 |
Target: 5'- uGUGCcagGCAGGCGCGUcGAUCcgguGCCG-GGc -3' miRNA: 3'- -CGCGa--CGUCUGUGCA-UUAG----CGGUaCC- -5' |
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24666 | 5' | -51.7 | NC_005264.1 | + | 98412 | 0.67 | 0.982399 |
Target: 5'- cCGCgGCAGA--CGUcAUCGCCGUGc -3' miRNA: 3'- cGCGaCGUCUguGCAuUAGCGGUACc -5' |
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24666 | 5' | -51.7 | NC_005264.1 | + | 102579 | 0.67 | 0.982399 |
Target: 5'- gGCGCUcaccGCAGcuCGCGUGAcCGCauaCAUGGc -3' miRNA: 3'- -CGCGA----CGUCu-GUGCAUUaGCG---GUACC- -5' |
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24666 | 5' | -51.7 | NC_005264.1 | + | 156323 | 0.67 | 0.982399 |
Target: 5'- gGCGCUGCAaACGCGcugcuUCGCUAc-- -3' miRNA: 3'- -CGCGACGUcUGUGCauu--AGCGGUacc -5' |
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24666 | 5' | -51.7 | NC_005264.1 | + | 4607 | 0.67 | 0.982196 |
Target: 5'- aGCGCcgcggcggcGUAGGCGCGUucucgaaAAUCGCCG-GGc -3' miRNA: 3'- -CGCGa--------CGUCUGUGCA-------UUAGCGGUaCC- -5' |
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24666 | 5' | -51.7 | NC_005264.1 | + | 43188 | 0.67 | 0.978006 |
Target: 5'- cGCGCUGCcugcGACGCGg----GCCGgcgGGg -3' miRNA: 3'- -CGCGACGu---CUGUGCauuagCGGUa--CC- -5' |
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24666 | 5' | -51.7 | NC_005264.1 | + | 6519 | 0.67 | 0.978006 |
Target: 5'- uUGCcGUAGuACACGUAAUCGgCGgcagGGg -3' miRNA: 3'- cGCGaCGUC-UGUGCAUUAGCgGUa---CC- -5' |
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24666 | 5' | -51.7 | NC_005264.1 | + | 34126 | 0.67 | 0.98433 |
Target: 5'- uCGCUGCcucuggugacGGGCGCGUAGgcuucggGUCGUGGu -3' miRNA: 3'- cGCGACG----------UCUGUGCAUUag-----CGGUACC- -5' |
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24666 | 5' | -51.7 | NC_005264.1 | + | 42060 | 0.67 | 0.986096 |
Target: 5'- cGCGUUGCccgcGGCGCGUGGcgucagcugCGCCG-GGa -3' miRNA: 3'- -CGCGACGu---CUGUGCAUUa--------GCGGUaCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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