miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24666 5' -51.7 NC_005264.1 + 102866 1.14 0.004332
Target:  5'- gGCGCUGCAGACACGUAAUCGCCAUGGa -3'
miRNA:   3'- -CGCGACGUCUGUGCAUUAGCGGUACC- -5'
24666 5' -51.7 NC_005264.1 + 111613 0.84 0.296959
Target:  5'- cGCGCUgugGCAGACACGUAGguaCGCCGaGGg -3'
miRNA:   3'- -CGCGA---CGUCUGUGCAUUa--GCGGUaCC- -5'
24666 5' -51.7 NC_005264.1 + 75646 0.79 0.501423
Target:  5'- uGUGCUGCAG-CAgGgcGUCGCCAgauUGGg -3'
miRNA:   3'- -CGCGACGUCuGUgCauUAGCGGU---ACC- -5'
24666 5' -51.7 NC_005264.1 + 72267 0.78 0.541419
Target:  5'- uGCGCUGCAGAgGCGUAcUgGCCGg-- -3'
miRNA:   3'- -CGCGACGUCUgUGCAUuAgCGGUacc -5'
24666 5' -51.7 NC_005264.1 + 136367 0.78 0.561819
Target:  5'- gGCGCUGCcGGCGCGaauagCGCUGUGGa -3'
miRNA:   3'- -CGCGACGuCUGUGCauua-GCGGUACC- -5'
24666 5' -51.7 NC_005264.1 + 31283 0.75 0.717109
Target:  5'- cGCGCacaUGCAGAaGCGUGAgcuUCGCCGacUGGu -3'
miRNA:   3'- -CGCG---ACGUCUgUGCAUU---AGCGGU--ACC- -5'
24666 5' -51.7 NC_005264.1 + 6160 0.74 0.756928
Target:  5'- cGCGCaucgcgUGCAcgauguggGGCACGccGGUCGCCAUGGc -3'
miRNA:   3'- -CGCG------ACGU--------CUGUGCa-UUAGCGGUACC- -5'
24666 5' -51.7 NC_005264.1 + 125187 0.74 0.756928
Target:  5'- cGCGCaucgcgUGCAcgauguggGGCACGccGGUCGCCAUGGc -3'
miRNA:   3'- -CGCG------ACGU--------CUGUGCa-UUAGCGGUACC- -5'
24666 5' -51.7 NC_005264.1 + 97432 0.73 0.794915
Target:  5'- aGCGCUGCGGGCGC-----CGCCGcGGa -3'
miRNA:   3'- -CGCGACGUCUGUGcauuaGCGGUaCC- -5'
24666 5' -51.7 NC_005264.1 + 39615 0.72 0.847145
Target:  5'- cGCGCuUGCuccuAGACACGg---CGCUGUGGu -3'
miRNA:   3'- -CGCG-ACG----UCUGUGCauuaGCGGUACC- -5'
24666 5' -51.7 NC_005264.1 + 75093 0.71 0.89212
Target:  5'- gGCGCUGCGGcAgGCGccggCGCCGagcUGGg -3'
miRNA:   3'- -CGCGACGUC-UgUGCauuaGCGGU---ACC- -5'
24666 5' -51.7 NC_005264.1 + 47275 0.71 0.89212
Target:  5'- gGgGCUGCAGGC-UGUgguguggaGAUUGCCAUGa -3'
miRNA:   3'- -CgCGACGUCUGuGCA--------UUAGCGGUACc -5'
24666 5' -51.7 NC_005264.1 + 69251 0.71 0.898815
Target:  5'- aGCGUuuuUGCAGGCACuuuucggCGCCAUGa -3'
miRNA:   3'- -CGCG---ACGUCUGUGcauua--GCGGUACc -5'
24666 5' -51.7 NC_005264.1 + 93853 0.71 0.898815
Target:  5'- cGCGCaauaaUGCGG-CGgGUAGUCguGCCGUGGc -3'
miRNA:   3'- -CGCG-----ACGUCuGUgCAUUAG--CGGUACC- -5'
24666 5' -51.7 NC_005264.1 + 27508 0.71 0.905268
Target:  5'- gGCGCagugGCGGGCugG--GUCGCCGUa- -3'
miRNA:   3'- -CGCGa---CGUCUGugCauUAGCGGUAcc -5'
24666 5' -51.7 NC_005264.1 + 103054 0.71 0.905268
Target:  5'- cCGCgGCGGACACG-----GCCGUGGa -3'
miRNA:   3'- cGCGaCGUCUGUGCauuagCGGUACC- -5'
24666 5' -51.7 NC_005264.1 + 94401 0.7 0.922599
Target:  5'- cGCGC-GCAGACcgcggcgcggacuGCGcGAUCGCUgacGUGGg -3'
miRNA:   3'- -CGCGaCGUCUG-------------UGCaUUAGCGG---UACC- -5'
24666 5' -51.7 NC_005264.1 + 145813 0.7 0.92316
Target:  5'- cGCGCUGCuGGCGac-GAUCGCCGc-- -3'
miRNA:   3'- -CGCGACGuCUGUgcaUUAGCGGUacc -5'
24666 5' -51.7 NC_005264.1 + 151094 0.7 0.933849
Target:  5'- cGCGC--CAGACgACGUGauguuuGUCGCCAUGu -3'
miRNA:   3'- -CGCGacGUCUG-UGCAU------UAGCGGUACc -5'
24666 5' -51.7 NC_005264.1 + 147895 0.7 0.938821
Target:  5'- cGCGCgaUGCAGAC-UGUGAUgGCCGc-- -3'
miRNA:   3'- -CGCG--ACGUCUGuGCAUUAgCGGUacc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.