miRNA display CGI


Results 21 - 40 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24666 5' -51.7 NC_005264.1 + 36101 0.69 0.943546
Target:  5'- gGCGCggcugGCAGAUggGUAcUCGCCGg-- -3'
miRNA:   3'- -CGCGa----CGUCUGugCAUuAGCGGUacc -5'
24666 5' -51.7 NC_005264.1 + 25615 0.69 0.943546
Target:  5'- gGCGUUGCGGaACACGgcg--GCgGUGGg -3'
miRNA:   3'- -CGCGACGUC-UGUGCauuagCGgUACC- -5'
24666 5' -51.7 NC_005264.1 + 142810 0.69 0.943546
Target:  5'- aCGCUGCacGGGUGCGaGcgCGCCGUGGu -3'
miRNA:   3'- cGCGACG--UCUGUGCaUuaGCGGUACC- -5'
24666 5' -51.7 NC_005264.1 + 144574 0.69 0.948026
Target:  5'- aGCGCUGUAcGGCcCGU-GUCGcCCAUGcGg -3'
miRNA:   3'- -CGCGACGU-CUGuGCAuUAGC-GGUAC-C- -5'
24666 5' -51.7 NC_005264.1 + 3624 0.69 0.952265
Target:  5'- cGCGaggGCGGGCGCGcUGacauucGUCGCgAUGGc -3'
miRNA:   3'- -CGCga-CGUCUGUGC-AU------UAGCGgUACC- -5'
24666 5' -51.7 NC_005264.1 + 122651 0.69 0.952265
Target:  5'- cGCGaggGCGGGCGCGcUGacauucGUCGCgAUGGc -3'
miRNA:   3'- -CGCga-CGUCUGUGC-AU------UAGCGgUACC- -5'
24666 5' -51.7 NC_005264.1 + 56528 0.69 0.956266
Target:  5'- cGCGCcgGCGGcACAgGUGAUggUGCCGgcgGGg -3'
miRNA:   3'- -CGCGa-CGUC-UGUgCAUUA--GCGGUa--CC- -5'
24666 5' -51.7 NC_005264.1 + 40642 0.69 0.956266
Target:  5'- cGCGCcgucGC-GACGCGgagGGUCGCCGUuucGGu -3'
miRNA:   3'- -CGCGa---CGuCUGUGCa--UUAGCGGUA---CC- -5'
24666 5' -51.7 NC_005264.1 + 70639 0.69 0.959297
Target:  5'- cGCGC-GCAGGCGCGUcaacaacaCCGUGGc -3'
miRNA:   3'- -CGCGaCGUCUGUGCAuuagc---GGUACC- -5'
24666 5' -51.7 NC_005264.1 + 3769 0.68 0.963568
Target:  5'- gGCGCUGCGGGCcCuUGGUCGaCCGc-- -3'
miRNA:   3'- -CGCGACGUCUGuGcAUUAGC-GGUacc -5'
24666 5' -51.7 NC_005264.1 + 122795 0.68 0.963568
Target:  5'- gGCGCUGCGGGCcCuUGGUCGaCCGc-- -3'
miRNA:   3'- -CGCGACGUCUGuGcAUUAGC-GGUacc -5'
24666 5' -51.7 NC_005264.1 + 161680 0.68 0.963568
Target:  5'- cGCGCgccgGCAGACugGcggccgGAUCGucCCGUGc -3'
miRNA:   3'- -CGCGa---CGUCUGugCa-----UUAGC--GGUACc -5'
24666 5' -51.7 NC_005264.1 + 69860 0.68 0.963568
Target:  5'- gGUGCUGCGG-CGCGUgguGAUC-CCcUGGc -3'
miRNA:   3'- -CGCGACGUCuGUGCA---UUAGcGGuACC- -5'
24666 5' -51.7 NC_005264.1 + 42654 0.68 0.963568
Target:  5'- cGCGCgccgGCAGACugGcggccgGAUCGucCCGUGc -3'
miRNA:   3'- -CGCGa---CGUCUGugCa-----UUAGC--GGUACc -5'
24666 5' -51.7 NC_005264.1 + 13189 0.68 0.966879
Target:  5'- cGCGCUGC--GCGCGgauccGUCGCCGc-- -3'
miRNA:   3'- -CGCGACGucUGUGCau---UAGCGGUacc -5'
24666 5' -51.7 NC_005264.1 + 132216 0.68 0.966879
Target:  5'- cGCGCUGC--GCGCGgauccGUCGCCGc-- -3'
miRNA:   3'- -CGCGACGucUGUGCau---UAGCGGUacc -5'
24666 5' -51.7 NC_005264.1 + 138309 0.68 0.969972
Target:  5'- gGCGCaccGCAGGCAaGUuGUgGUCAUGGc -3'
miRNA:   3'- -CGCGa--CGUCUGUgCAuUAgCGGUACC- -5'
24666 5' -51.7 NC_005264.1 + 40280 0.68 0.969972
Target:  5'- gGCGCUGC-GugACGU--UUGUCGUGu -3'
miRNA:   3'- -CGCGACGuCugUGCAuuAGCGGUACc -5'
24666 5' -51.7 NC_005264.1 + 70527 0.68 0.972011
Target:  5'- gGCGCUGgAuGGCGCGUAuacagaaaacacacGcCGCCAcUGGg -3'
miRNA:   3'- -CGCGACgU-CUGUGCAU--------------UaGCGGU-ACC- -5'
24666 5' -51.7 NC_005264.1 + 11832 0.68 0.972853
Target:  5'- gGCGCUGUagcgcgcaucGGACACGcggcccGUCGCCGc-- -3'
miRNA:   3'- -CGCGACG----------UCUGUGCau----UAGCGGUacc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.