Results 21 - 40 of 93 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24666 | 5' | -51.7 | NC_005264.1 | + | 143887 | 0.66 | 0.987705 |
Target: 5'- gGCGCgGCGGGCGCaacGUCGaUUGUGGg -3' miRNA: 3'- -CGCGaCGUCUGUGcauUAGC-GGUACC- -5' |
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24666 | 5' | -51.7 | NC_005264.1 | + | 156201 | 0.66 | 0.987551 |
Target: 5'- -aGCUucCGGACAUGUGcccccgcGUgGCCGUGGg -3' miRNA: 3'- cgCGAc-GUCUGUGCAU-------UAgCGGUACC- -5' |
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24666 | 5' | -51.7 | NC_005264.1 | + | 37174 | 0.66 | 0.987551 |
Target: 5'- -aGCUucCGGACAUGUGcccccgcGUgGCCGUGGg -3' miRNA: 3'- cgCGAc-GUCUGUGCAU-------UAgCGGUACC- -5' |
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24666 | 5' | -51.7 | NC_005264.1 | + | 42060 | 0.67 | 0.986096 |
Target: 5'- cGCGUUGCccgcGGCGCGUGGcgucagcugCGCCG-GGa -3' miRNA: 3'- -CGCGACGu---CUGUGCAUUa--------GCGGUaCC- -5' |
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24666 | 5' | -51.7 | NC_005264.1 | + | 122878 | 0.67 | 0.986096 |
Target: 5'- aCGaCcGCAGACucgcagcCGaGGUCGCCGUGGc -3' miRNA: 3'- cGC-GaCGUCUGu------GCaUUAGCGGUACC- -5' |
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24666 | 5' | -51.7 | NC_005264.1 | + | 82359 | 0.67 | 0.986096 |
Target: 5'- uGUGCcagGCAGGCGCGUcGAUCcgguGCCG-GGc -3' miRNA: 3'- -CGCGa--CGUCUGUGCA-UUAG----CGGUaCC- -5' |
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24666 | 5' | -51.7 | NC_005264.1 | + | 101604 | 0.67 | 0.986096 |
Target: 5'- -aGCUGgAG-CGCGccAUCGCCAacgUGGa -3' miRNA: 3'- cgCGACgUCuGUGCauUAGCGGU---ACC- -5' |
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24666 | 5' | -51.7 | NC_005264.1 | + | 3852 | 0.67 | 0.986096 |
Target: 5'- aCGaCcGCAGACucgcagcCGaGGUCGCCGUGGc -3' miRNA: 3'- cGC-GaCGUCUGu------GCaUUAGCGGUACC- -5' |
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24666 | 5' | -51.7 | NC_005264.1 | + | 30356 | 0.67 | 0.986096 |
Target: 5'- uGCcCUGCGGcCACGUGGcUGCCGUa- -3' miRNA: 3'- -CGcGACGUCuGUGCAUUaGCGGUAcc -5' |
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24666 | 5' | -51.7 | NC_005264.1 | + | 23869 | 0.67 | 0.985756 |
Target: 5'- cGCGUUccucugaggauucugGCAGACucugaAccuggaccuucaugcCGUAAUCGCCGUGGc -3' miRNA: 3'- -CGCGA---------------CGUCUG-----U---------------GCAUUAGCGGUACC- -5' |
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24666 | 5' | -51.7 | NC_005264.1 | + | 142078 | 0.67 | 0.98433 |
Target: 5'- uGCGCU-CAuGACGuugcUGUGGUCGCCA-GGc -3' miRNA: 3'- -CGCGAcGU-CUGU----GCAUUAGCGGUaCC- -5' |
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24666 | 5' | -51.7 | NC_005264.1 | + | 109904 | 0.67 | 0.98433 |
Target: 5'- uGCGCcGCGGGCGCG-----GCCAUGc -3' miRNA: 3'- -CGCGaCGUCUGUGCauuagCGGUACc -5' |
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24666 | 5' | -51.7 | NC_005264.1 | + | 64991 | 0.67 | 0.98433 |
Target: 5'- cCGCUGCGGcgcucUACGUAGUcCGCgAUGa -3' miRNA: 3'- cGCGACGUCu----GUGCAUUA-GCGgUACc -5' |
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24666 | 5' | -51.7 | NC_005264.1 | + | 34126 | 0.67 | 0.98433 |
Target: 5'- uCGCUGCcucuggugacGGGCGCGUAGgcuucggGUCGUGGu -3' miRNA: 3'- cGCGACG----------UCUGUGCAUUag-----CGGUACC- -5' |
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24666 | 5' | -51.7 | NC_005264.1 | + | 95666 | 0.67 | 0.983192 |
Target: 5'- aGCGCUGCAGGC-CGccauccaccccuUCGUCAcagGGa -3' miRNA: 3'- -CGCGACGUCUGuGCauu---------AGCGGUa--CC- -5' |
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24666 | 5' | -51.7 | NC_005264.1 | + | 139479 | 0.67 | 0.982399 |
Target: 5'- uGCGgaGC-GACugGagagAAUCGCCucgGGg -3' miRNA: 3'- -CGCgaCGuCUGugCa---UUAGCGGua-CC- -5' |
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24666 | 5' | -51.7 | NC_005264.1 | + | 98412 | 0.67 | 0.982399 |
Target: 5'- cCGCgGCAGA--CGUcAUCGCCGUGc -3' miRNA: 3'- cGCGaCGUCUguGCAuUAGCGGUACc -5' |
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24666 | 5' | -51.7 | NC_005264.1 | + | 102579 | 0.67 | 0.982399 |
Target: 5'- gGCGCUcaccGCAGcuCGCGUGAcCGCauaCAUGGc -3' miRNA: 3'- -CGCGA----CGUCu-GUGCAUUaGCG---GUACC- -5' |
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24666 | 5' | -51.7 | NC_005264.1 | + | 156323 | 0.67 | 0.982399 |
Target: 5'- gGCGCUGCAaACGCGcugcuUCGCUAc-- -3' miRNA: 3'- -CGCGACGUcUGUGCauu--AGCGGUacc -5' |
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24666 | 5' | -51.7 | NC_005264.1 | + | 24419 | 0.67 | 0.982399 |
Target: 5'- aGCGCgacGCAaaGCACGUucUCGCCGcuaUGGc -3' miRNA: 3'- -CGCGa--CGUc-UGUGCAuuAGCGGU---ACC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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