miRNA display CGI


Results 41 - 60 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24666 5' -51.7 NC_005264.1 + 139479 0.67 0.982399
Target:  5'- uGCGgaGC-GACugGagagAAUCGCCucgGGg -3'
miRNA:   3'- -CGCgaCGuCUGugCa---UUAGCGGua-CC- -5'
24666 5' -51.7 NC_005264.1 + 4607 0.67 0.982196
Target:  5'- aGCGCcgcggcggcGUAGGCGCGUucucgaaAAUCGCCG-GGc -3'
miRNA:   3'- -CGCGa--------CGUCUGUGCA-------UUAGCGGUaCC- -5'
24666 5' -51.7 NC_005264.1 + 123634 0.67 0.982196
Target:  5'- aGCGCcgcggcggcGUAGGCGCGUucucgaaAAUCGCCG-GGc -3'
miRNA:   3'- -CGCGa--------CGUCUGUGCA-------UUAGCGGUaCC- -5'
24666 5' -51.7 NC_005264.1 + 94616 0.67 0.980294
Target:  5'- cCGCcggcGCGGAUACGUcAUCGCUGaGGa -3'
miRNA:   3'- cGCGa---CGUCUGUGCAuUAGCGGUaCC- -5'
24666 5' -51.7 NC_005264.1 + 125546 0.67 0.978006
Target:  5'- uUGCcGUAGuACACGUAAUCGgCGgcagGGg -3'
miRNA:   3'- cGCGaCGUC-UGUGCAUUAGCgGUa---CC- -5'
24666 5' -51.7 NC_005264.1 + 162215 0.67 0.978006
Target:  5'- cGCGCUGCcugcGACGCGg----GCCGgcgGGg -3'
miRNA:   3'- -CGCGACGu---CUGUGCauuagCGGUa--CC- -5'
24666 5' -51.7 NC_005264.1 + 6519 0.67 0.978006
Target:  5'- uUGCcGUAGuACACGUAAUCGgCGgcagGGg -3'
miRNA:   3'- cGCGaCGUC-UGUGCAUUAGCgGUa---CC- -5'
24666 5' -51.7 NC_005264.1 + 43188 0.67 0.978006
Target:  5'- cGCGCUGCcugcGACGCGg----GCCGgcgGGg -3'
miRNA:   3'- -CGCGACGu---CUGUGCauuagCGGUa--CC- -5'
24666 5' -51.7 NC_005264.1 + 8283 0.67 0.978006
Target:  5'- uCGUUGCAGGCcggggagauccGCGUGccAUCGCCGg-- -3'
miRNA:   3'- cGCGACGUCUG-----------UGCAU--UAGCGGUacc -5'
24666 5' -51.7 NC_005264.1 + 66692 0.68 0.975529
Target:  5'- gGCGCcggGCgGGGgGCGUAcuacguGUCGCCggGGa -3'
miRNA:   3'- -CGCGa--CG-UCUgUGCAU------UAGCGGuaCC- -5'
24666 5' -51.7 NC_005264.1 + 30636 0.68 0.972853
Target:  5'- cGCGC-GCAG-CGCGUAGgUCGUCGUc- -3'
miRNA:   3'- -CGCGaCGUCuGUGCAUU-AGCGGUAcc -5'
24666 5' -51.7 NC_005264.1 + 11832 0.68 0.972853
Target:  5'- gGCGCUGUagcgcgcaucGGACACGcggcccGUCGCCGc-- -3'
miRNA:   3'- -CGCGACG----------UCUGUGCau----UAGCGGUacc -5'
24666 5' -51.7 NC_005264.1 + 130858 0.68 0.972853
Target:  5'- gGCGCUGUagcgcgcaucGGACACGcggcccGUCGCCGc-- -3'
miRNA:   3'- -CGCGACG----------UCUGUGCau----UAGCGGUacc -5'
24666 5' -51.7 NC_005264.1 + 149663 0.68 0.972853
Target:  5'- cGCGC-GCAG-CGCGUAGgUCGUCGUc- -3'
miRNA:   3'- -CGCGaCGUCuGUGCAUU-AGCGGUAcc -5'
24666 5' -51.7 NC_005264.1 + 70527 0.68 0.972011
Target:  5'- gGCGCUGgAuGGCGCGUAuacagaaaacacacGcCGCCAcUGGg -3'
miRNA:   3'- -CGCGACgU-CUGUGCAU--------------UaGCGGU-ACC- -5'
24666 5' -51.7 NC_005264.1 + 138309 0.68 0.969972
Target:  5'- gGCGCaccGCAGGCAaGUuGUgGUCAUGGc -3'
miRNA:   3'- -CGCGa--CGUCUGUgCAuUAgCGGUACC- -5'
24666 5' -51.7 NC_005264.1 + 40280 0.68 0.969972
Target:  5'- gGCGCUGC-GugACGU--UUGUCGUGu -3'
miRNA:   3'- -CGCGACGuCugUGCAuuAGCGGUACc -5'
24666 5' -51.7 NC_005264.1 + 13189 0.68 0.966879
Target:  5'- cGCGCUGC--GCGCGgauccGUCGCCGc-- -3'
miRNA:   3'- -CGCGACGucUGUGCau---UAGCGGUacc -5'
24666 5' -51.7 NC_005264.1 + 132216 0.68 0.966879
Target:  5'- cGCGCUGC--GCGCGgauccGUCGCCGc-- -3'
miRNA:   3'- -CGCGACGucUGUGCau---UAGCGGUacc -5'
24666 5' -51.7 NC_005264.1 + 161680 0.68 0.963568
Target:  5'- cGCGCgccgGCAGACugGcggccgGAUCGucCCGUGc -3'
miRNA:   3'- -CGCGa---CGUCUGugCa-----UUAGC--GGUACc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.