miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24666 5' -51.7 NC_005264.1 + 1192 0.66 0.990489
Target:  5'- aCGCaGCGGACcggGCGUccgCGgCCAUGGc -3'
miRNA:   3'- cGCGaCGUCUG---UGCAuuaGC-GGUACC- -5'
24666 5' -51.7 NC_005264.1 + 3624 0.69 0.952265
Target:  5'- cGCGaggGCGGGCGCGcUGacauucGUCGCgAUGGc -3'
miRNA:   3'- -CGCga-CGUCUGUGC-AU------UAGCGgUACC- -5'
24666 5' -51.7 NC_005264.1 + 3769 0.68 0.963568
Target:  5'- gGCGCUGCGGGCcCuUGGUCGaCCGc-- -3'
miRNA:   3'- -CGCGACGUCUGuGcAUUAGC-GGUacc -5'
24666 5' -51.7 NC_005264.1 + 3852 0.67 0.986096
Target:  5'- aCGaCcGCAGACucgcagcCGaGGUCGCCGUGGc -3'
miRNA:   3'- cGC-GaCGUCUGu------GCaUUAGCGGUACC- -5'
24666 5' -51.7 NC_005264.1 + 4607 0.67 0.982196
Target:  5'- aGCGCcgcggcggcGUAGGCGCGUucucgaaAAUCGCCG-GGc -3'
miRNA:   3'- -CGCGa--------CGUCUGUGCA-------UUAGCGGUaCC- -5'
24666 5' -51.7 NC_005264.1 + 6160 0.74 0.756928
Target:  5'- cGCGCaucgcgUGCAcgauguggGGCACGccGGUCGCCAUGGc -3'
miRNA:   3'- -CGCG------ACGU--------CUGUGCa-UUAGCGGUACC- -5'
24666 5' -51.7 NC_005264.1 + 6519 0.67 0.978006
Target:  5'- uUGCcGUAGuACACGUAAUCGgCGgcagGGg -3'
miRNA:   3'- cGCGaCGUC-UGUGCAUUAGCgGUa---CC- -5'
24666 5' -51.7 NC_005264.1 + 6944 0.66 0.990363
Target:  5'- gGCGCagGCAGAUACGUcgaccaccaauacAucuucGUCGUCGUGu -3'
miRNA:   3'- -CGCGa-CGUCUGUGCA-------------U-----UAGCGGUACc -5'
24666 5' -51.7 NC_005264.1 + 8283 0.67 0.978006
Target:  5'- uCGUUGCAGGCcggggagauccGCGUGccAUCGCCGg-- -3'
miRNA:   3'- cGCGACGUCUG-----------UGCAU--UAGCGGUacc -5'
24666 5' -51.7 NC_005264.1 + 8710 0.66 0.990489
Target:  5'- cGCuCUGCGcGCGCGUGGcCGCCGUuucGGc -3'
miRNA:   3'- -CGcGACGUcUGUGCAUUaGCGGUA---CC- -5'
24666 5' -51.7 NC_005264.1 + 11832 0.68 0.972853
Target:  5'- gGCGCUGUagcgcgcaucGGACACGcggcccGUCGCCGc-- -3'
miRNA:   3'- -CGCGACG----------UCUGUGCau----UAGCGGUacc -5'
24666 5' -51.7 NC_005264.1 + 13189 0.68 0.966879
Target:  5'- cGCGCUGC--GCGCGgauccGUCGCCGc-- -3'
miRNA:   3'- -CGCGACGucUGUGCau---UAGCGGUacc -5'
24666 5' -51.7 NC_005264.1 + 20451 0.66 0.987705
Target:  5'- gGCGUagccgGCGGACAgCGg---CGCgCAUGGg -3'
miRNA:   3'- -CGCGa----CGUCUGU-GCauuaGCG-GUACC- -5'
24666 5' -51.7 NC_005264.1 + 23869 0.67 0.985756
Target:  5'- cGCGUUccucugaggauucugGCAGACucugaAccuggaccuucaugcCGUAAUCGCCGUGGc -3'
miRNA:   3'- -CGCGA---------------CGUCUG-----U---------------GCAUUAGCGGUACC- -5'
24666 5' -51.7 NC_005264.1 + 24419 0.67 0.982399
Target:  5'- aGCGCgacGCAaaGCACGUucUCGCCGcuaUGGc -3'
miRNA:   3'- -CGCGa--CGUc-UGUGCAuuAGCGGU---ACC- -5'
24666 5' -51.7 NC_005264.1 + 25615 0.69 0.943546
Target:  5'- gGCGUUGCGGaACACGgcg--GCgGUGGg -3'
miRNA:   3'- -CGCGACGUC-UGUGCauuagCGgUACC- -5'
24666 5' -51.7 NC_005264.1 + 27508 0.71 0.905268
Target:  5'- gGCGCagugGCGGGCugG--GUCGCCGUa- -3'
miRNA:   3'- -CGCGa---CGUCUGugCauUAGCGGUAcc -5'
24666 5' -51.7 NC_005264.1 + 30356 0.67 0.986096
Target:  5'- uGCcCUGCGGcCACGUGGcUGCCGUa- -3'
miRNA:   3'- -CGcGACGUCuGUGCAUUaGCGGUAcc -5'
24666 5' -51.7 NC_005264.1 + 30636 0.68 0.972853
Target:  5'- cGCGC-GCAG-CGCGUAGgUCGUCGUc- -3'
miRNA:   3'- -CGCGaCGUCuGUGCAUU-AGCGGUAcc -5'
24666 5' -51.7 NC_005264.1 + 31283 0.75 0.717109
Target:  5'- cGCGCacaUGCAGAaGCGUGAgcuUCGCCGacUGGu -3'
miRNA:   3'- -CGCG---ACGUCUgUGCAUU---AGCGGU--ACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.