miRNA display CGI


Results 21 - 40 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24666 5' -51.7 NC_005264.1 + 34126 0.67 0.98433
Target:  5'- uCGCUGCcucuggugacGGGCGCGUAGgcuucggGUCGUGGu -3'
miRNA:   3'- cGCGACG----------UCUGUGCAUUag-----CGGUACC- -5'
24666 5' -51.7 NC_005264.1 + 36101 0.69 0.943546
Target:  5'- gGCGCggcugGCAGAUggGUAcUCGCCGg-- -3'
miRNA:   3'- -CGCGa----CGUCUGugCAUuAGCGGUacc -5'
24666 5' -51.7 NC_005264.1 + 37174 0.66 0.987551
Target:  5'- -aGCUucCGGACAUGUGcccccgcGUgGCCGUGGg -3'
miRNA:   3'- cgCGAc-GUCUGUGCAU-------UAgCGGUACC- -5'
24666 5' -51.7 NC_005264.1 + 39417 0.66 0.987705
Target:  5'- uGCGCUGCucagcgccggAGACAuCGguuUUGCCggGGc -3'
miRNA:   3'- -CGCGACG----------UCUGU-GCauuAGCGGuaCC- -5'
24666 5' -51.7 NC_005264.1 + 39615 0.72 0.847145
Target:  5'- cGCGCuUGCuccuAGACACGg---CGCUGUGGu -3'
miRNA:   3'- -CGCG-ACG----UCUGUGCauuaGCGGUACC- -5'
24666 5' -51.7 NC_005264.1 + 40280 0.68 0.969972
Target:  5'- gGCGCUGC-GugACGU--UUGUCGUGu -3'
miRNA:   3'- -CGCGACGuCugUGCAuuAGCGGUACc -5'
24666 5' -51.7 NC_005264.1 + 40642 0.69 0.956266
Target:  5'- cGCGCcgucGC-GACGCGgagGGUCGCCGUuucGGu -3'
miRNA:   3'- -CGCGa---CGuCUGUGCa--UUAGCGGUA---CC- -5'
24666 5' -51.7 NC_005264.1 + 42060 0.67 0.986096
Target:  5'- cGCGUUGCccgcGGCGCGUGGcgucagcugCGCCG-GGa -3'
miRNA:   3'- -CGCGACGu---CUGUGCAUUa--------GCGGUaCC- -5'
24666 5' -51.7 NC_005264.1 + 42654 0.68 0.963568
Target:  5'- cGCGCgccgGCAGACugGcggccgGAUCGucCCGUGc -3'
miRNA:   3'- -CGCGa---CGUCUGugCa-----UUAGC--GGUACc -5'
24666 5' -51.7 NC_005264.1 + 43188 0.67 0.978006
Target:  5'- cGCGCUGCcugcGACGCGg----GCCGgcgGGg -3'
miRNA:   3'- -CGCGACGu---CUGUGCauuagCGGUa--CC- -5'
24666 5' -51.7 NC_005264.1 + 44789 0.66 0.990489
Target:  5'- uCGUUGCcGACGcCGcGGUCGCCGcGGc -3'
miRNA:   3'- cGCGACGuCUGU-GCaUUAGCGGUaCC- -5'
24666 5' -51.7 NC_005264.1 + 47275 0.71 0.89212
Target:  5'- gGgGCUGCAGGC-UGUgguguggaGAUUGCCAUGa -3'
miRNA:   3'- -CgCGACGUCUGuGCA--------UUAGCGGUACc -5'
24666 5' -51.7 NC_005264.1 + 52196 0.67 0.982399
Target:  5'- uGUGCUGaGGGC-CGUGGggCGCgGUGGc -3'
miRNA:   3'- -CGCGACgUCUGuGCAUUa-GCGgUACC- -5'
24666 5' -51.7 NC_005264.1 + 53591 0.66 0.991682
Target:  5'- uGCGUUuuguggcacaGCAG-CGCGUAAUCcGCCAUc- -3'
miRNA:   3'- -CGCGA----------CGUCuGUGCAUUAG-CGGUAcc -5'
24666 5' -51.7 NC_005264.1 + 56528 0.69 0.956266
Target:  5'- cGCGCcgGCGGcACAgGUGAUggUGCCGgcgGGg -3'
miRNA:   3'- -CGCGa-CGUC-UGUgCAUUA--GCGGUa--CC- -5'
24666 5' -51.7 NC_005264.1 + 64991 0.67 0.98433
Target:  5'- cCGCUGCGGcgcucUACGUAGUcCGCgAUGa -3'
miRNA:   3'- cGCGACGUCu----GUGCAUUA-GCGgUACc -5'
24666 5' -51.7 NC_005264.1 + 66692 0.68 0.975529
Target:  5'- gGCGCcggGCgGGGgGCGUAcuacguGUCGCCggGGa -3'
miRNA:   3'- -CGCGa--CG-UCUgUGCAU------UAGCGGuaCC- -5'
24666 5' -51.7 NC_005264.1 + 69251 0.71 0.898815
Target:  5'- aGCGUuuuUGCAGGCACuuuucggCGCCAUGa -3'
miRNA:   3'- -CGCG---ACGUCUGUGcauua--GCGGUACc -5'
24666 5' -51.7 NC_005264.1 + 69860 0.68 0.963568
Target:  5'- gGUGCUGCGG-CGCGUgguGAUC-CCcUGGc -3'
miRNA:   3'- -CGCGACGUCuGUGCA---UUAGcGGuACC- -5'
24666 5' -51.7 NC_005264.1 + 70527 0.68 0.972011
Target:  5'- gGCGCUGgAuGGCGCGUAuacagaaaacacacGcCGCCAcUGGg -3'
miRNA:   3'- -CGCGACgU-CUGUGCAU--------------UaGCGGU-ACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.