miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24666 5' -51.7 NC_005264.1 + 162215 0.67 0.978006
Target:  5'- cGCGCUGCcugcGACGCGg----GCCGgcgGGg -3'
miRNA:   3'- -CGCGACGu---CUGUGCauuagCGGUa--CC- -5'
24666 5' -51.7 NC_005264.1 + 161680 0.68 0.963568
Target:  5'- cGCGCgccgGCAGACugGcggccgGAUCGucCCGUGc -3'
miRNA:   3'- -CGCGa---CGUCUGugCa-----UUAGC--GGUACc -5'
24666 5' -51.7 NC_005264.1 + 158444 0.66 0.987705
Target:  5'- uGCGCUGCucagcgccggAGACAuCGguuUUGCCggGGc -3'
miRNA:   3'- -CGCGACG----------UCUGU-GCauuAGCGGuaCC- -5'
24666 5' -51.7 NC_005264.1 + 156323 0.67 0.982399
Target:  5'- gGCGCUGCAaACGCGcugcuUCGCUAc-- -3'
miRNA:   3'- -CGCGACGUcUGUGCauu--AGCGGUacc -5'
24666 5' -51.7 NC_005264.1 + 156201 0.66 0.987551
Target:  5'- -aGCUucCGGACAUGUGcccccgcGUgGCCGUGGg -3'
miRNA:   3'- cgCGAc-GUCUGUGCAU-------UAgCGGUACC- -5'
24666 5' -51.7 NC_005264.1 + 151094 0.7 0.933849
Target:  5'- cGCGC--CAGACgACGUGauguuuGUCGCCAUGu -3'
miRNA:   3'- -CGCGacGUCUG-UGCAU------UAGCGGUACc -5'
24666 5' -51.7 NC_005264.1 + 149663 0.68 0.972853
Target:  5'- cGCGC-GCAG-CGCGUAGgUCGUCGUc- -3'
miRNA:   3'- -CGCGaCGUCuGUGCAUU-AGCGGUAcc -5'
24666 5' -51.7 NC_005264.1 + 147895 0.7 0.938821
Target:  5'- cGCGCgaUGCAGAC-UGUGAUgGCCGc-- -3'
miRNA:   3'- -CGCG--ACGUCUGuGCAUUAgCGGUacc -5'
24666 5' -51.7 NC_005264.1 + 145813 0.7 0.92316
Target:  5'- cGCGCUGCuGGCGac-GAUCGCCGc-- -3'
miRNA:   3'- -CGCGACGuCUGUgcaUUAGCGGUacc -5'
24666 5' -51.7 NC_005264.1 + 144574 0.69 0.948026
Target:  5'- aGCGCUGUAcGGCcCGU-GUCGcCCAUGcGg -3'
miRNA:   3'- -CGCGACGU-CUGuGCAuUAGC-GGUAC-C- -5'
24666 5' -51.7 NC_005264.1 + 143887 0.66 0.987705
Target:  5'- gGCGCgGCGGGCGCaacGUCGaUUGUGGg -3'
miRNA:   3'- -CGCGaCGUCUGUGcauUAGC-GGUACC- -5'
24666 5' -51.7 NC_005264.1 + 142810 0.69 0.943546
Target:  5'- aCGCUGCacGGGUGCGaGcgCGCCGUGGu -3'
miRNA:   3'- cGCGACG--UCUGUGCaUuaGCGGUACC- -5'
24666 5' -51.7 NC_005264.1 + 142078 0.67 0.98433
Target:  5'- uGCGCU-CAuGACGuugcUGUGGUCGCCA-GGc -3'
miRNA:   3'- -CGCGAcGU-CUGU----GCAUUAGCGGUaCC- -5'
24666 5' -51.7 NC_005264.1 + 139479 0.67 0.982399
Target:  5'- uGCGgaGC-GACugGagagAAUCGCCucgGGg -3'
miRNA:   3'- -CGCgaCGuCUGugCa---UUAGCGGua-CC- -5'
24666 5' -51.7 NC_005264.1 + 138384 0.66 0.991682
Target:  5'- cCGCcGCGGaACAagccAGUCGCUAUGGg -3'
miRNA:   3'- cGCGaCGUC-UGUgca-UUAGCGGUACC- -5'
24666 5' -51.7 NC_005264.1 + 138309 0.68 0.969972
Target:  5'- gGCGCaccGCAGGCAaGUuGUgGUCAUGGc -3'
miRNA:   3'- -CGCGa--CGUCUGUgCAuUAgCGGUACC- -5'
24666 5' -51.7 NC_005264.1 + 136367 0.78 0.561819
Target:  5'- gGCGCUGCcGGCGCGaauagCGCUGUGGa -3'
miRNA:   3'- -CGCGACGuCUGUGCauua-GCGGUACC- -5'
24666 5' -51.7 NC_005264.1 + 132216 0.68 0.966879
Target:  5'- cGCGCUGC--GCGCGgauccGUCGCCGc-- -3'
miRNA:   3'- -CGCGACGucUGUGCau---UAGCGGUacc -5'
24666 5' -51.7 NC_005264.1 + 130858 0.68 0.972853
Target:  5'- gGCGCUGUagcgcgcaucGGACACGcggcccGUCGCCGc-- -3'
miRNA:   3'- -CGCGACG----------UCUGUGCau----UAGCGGUacc -5'
24666 5' -51.7 NC_005264.1 + 125546 0.67 0.978006
Target:  5'- uUGCcGUAGuACACGUAAUCGgCGgcagGGg -3'
miRNA:   3'- cGCGaCGUC-UGUGCAUUAGCgGUa---CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.