miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24666 5' -51.7 NC_005264.1 + 102866 1.14 0.004332
Target:  5'- gGCGCUGCAGACACGUAAUCGCCAUGGa -3'
miRNA:   3'- -CGCGACGUCUGUGCAUUAGCGGUACC- -5'
24666 5' -51.7 NC_005264.1 + 70639 0.69 0.959297
Target:  5'- cGCGC-GCAGGCGCGUcaacaacaCCGUGGc -3'
miRNA:   3'- -CGCGaCGUCUGUGCAuuagc---GGUACC- -5'
24666 5' -51.7 NC_005264.1 + 161680 0.68 0.963568
Target:  5'- cGCGCgccgGCAGACugGcggccgGAUCGucCCGUGc -3'
miRNA:   3'- -CGCGa---CGUCUGugCa-----UUAGC--GGUACc -5'
24666 5' -51.7 NC_005264.1 + 87127 0.66 0.992752
Target:  5'- cGCGCUGUAcGC-CGaGAUCGUCGcGGu -3'
miRNA:   3'- -CGCGACGUcUGuGCaUUAGCGGUaCC- -5'
24666 5' -51.7 NC_005264.1 + 31283 0.75 0.717109
Target:  5'- cGCGCacaUGCAGAaGCGUGAgcuUCGCCGacUGGu -3'
miRNA:   3'- -CGCG---ACGUCUgUGCAUU---AGCGGU--ACC- -5'
24666 5' -51.7 NC_005264.1 + 125187 0.74 0.756928
Target:  5'- cGCGCaucgcgUGCAcgauguggGGCACGccGGUCGCCAUGGc -3'
miRNA:   3'- -CGCG------ACGU--------CUGUGCa-UUAGCGGUACC- -5'
24666 5' -51.7 NC_005264.1 + 39615 0.72 0.847145
Target:  5'- cGCGCuUGCuccuAGACACGg---CGCUGUGGu -3'
miRNA:   3'- -CGCG-ACG----UCUGUGCauuaGCGGUACC- -5'
24666 5' -51.7 NC_005264.1 + 75093 0.71 0.89212
Target:  5'- gGCGCUGCGGcAgGCGccggCGCCGagcUGGg -3'
miRNA:   3'- -CGCGACGUC-UgUGCauuaGCGGU---ACC- -5'
24666 5' -51.7 NC_005264.1 + 94401 0.7 0.922599
Target:  5'- cGCGC-GCAGACcgcggcgcggacuGCGcGAUCGCUgacGUGGg -3'
miRNA:   3'- -CGCGaCGUCUG-------------UGCaUUAGCGG---UACC- -5'
24666 5' -51.7 NC_005264.1 + 122651 0.69 0.952265
Target:  5'- cGCGaggGCGGGCGCGcUGacauucGUCGCgAUGGc -3'
miRNA:   3'- -CGCga-CGUCUGUGC-AU------UAGCGgUACC- -5'
24666 5' -51.7 NC_005264.1 + 36101 0.69 0.943546
Target:  5'- gGCGCggcugGCAGAUggGUAcUCGCCGg-- -3'
miRNA:   3'- -CGCGa----CGUCUGugCAUuAGCGGUacc -5'
24666 5' -51.7 NC_005264.1 + 27508 0.71 0.905268
Target:  5'- gGCGCagugGCGGGCugG--GUCGCCGUa- -3'
miRNA:   3'- -CGCGa---CGUCUGugCauUAGCGGUAcc -5'
24666 5' -51.7 NC_005264.1 + 111613 0.84 0.296959
Target:  5'- cGCGCUgugGCAGACACGUAGguaCGCCGaGGg -3'
miRNA:   3'- -CGCGA---CGUCUGUGCAUUa--GCGGUaCC- -5'
24666 5' -51.7 NC_005264.1 + 142810 0.69 0.943546
Target:  5'- aCGCUGCacGGGUGCGaGcgCGCCGUGGu -3'
miRNA:   3'- cGCGACG--UCUGUGCaUuaGCGGUACC- -5'
24666 5' -51.7 NC_005264.1 + 72267 0.78 0.541419
Target:  5'- uGCGCUGCAGAgGCGUAcUgGCCGg-- -3'
miRNA:   3'- -CGCGACGUCUgUGCAUuAgCGGUacc -5'
24666 5' -51.7 NC_005264.1 + 69251 0.71 0.898815
Target:  5'- aGCGUuuuUGCAGGCACuuuucggCGCCAUGa -3'
miRNA:   3'- -CGCG---ACGUCUGUGcauua--GCGGUACc -5'
24666 5' -51.7 NC_005264.1 + 144574 0.69 0.948026
Target:  5'- aGCGCUGUAcGGCcCGU-GUCGcCCAUGcGg -3'
miRNA:   3'- -CGCGACGU-CUGuGCAuUAGC-GGUAC-C- -5'
24666 5' -51.7 NC_005264.1 + 122795 0.68 0.963568
Target:  5'- gGCGCUGCGGGCcCuUGGUCGaCCGc-- -3'
miRNA:   3'- -CGCGACGUCUGuGcAUUAGC-GGUacc -5'
24666 5' -51.7 NC_005264.1 + 136367 0.78 0.561819
Target:  5'- gGCGCUGCcGGCGCGaauagCGCUGUGGa -3'
miRNA:   3'- -CGCGACGuCUGUGCauua-GCGGUACC- -5'
24666 5' -51.7 NC_005264.1 + 97432 0.73 0.794915
Target:  5'- aGCGCUGCGGGCGC-----CGCCGcGGa -3'
miRNA:   3'- -CGCGACGUCUGUGcauuaGCGGUaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.