miRNA display CGI


Results 21 - 40 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24666 5' -51.7 NC_005264.1 + 130858 0.68 0.972853
Target:  5'- gGCGCUGUagcgcgcaucGGACACGcggcccGUCGCCGc-- -3'
miRNA:   3'- -CGCGACG----------UCUGUGCau----UAGCGGUacc -5'
24666 5' -51.7 NC_005264.1 + 161680 0.68 0.963568
Target:  5'- cGCGCgccgGCAGACugGcggccgGAUCGucCCGUGc -3'
miRNA:   3'- -CGCGa---CGUCUGugCa-----UUAGC--GGUACc -5'
24666 5' -51.7 NC_005264.1 + 27508 0.71 0.905268
Target:  5'- gGCGCagugGCGGGCugG--GUCGCCGUa- -3'
miRNA:   3'- -CGCGa---CGUCUGugCauUAGCGGUAcc -5'
24666 5' -51.7 NC_005264.1 + 136367 0.78 0.561819
Target:  5'- gGCGCUGCcGGCGCGaauagCGCUGUGGa -3'
miRNA:   3'- -CGCGACGuCUGUGCauua-GCGGUACC- -5'
24666 5' -51.7 NC_005264.1 + 30356 0.67 0.986096
Target:  5'- uGCcCUGCGGcCACGUGGcUGCCGUa- -3'
miRNA:   3'- -CGcGACGUCuGUGCAUUaGCGGUAcc -5'
24666 5' -51.7 NC_005264.1 + 94616 0.67 0.980294
Target:  5'- cCGCcggcGCGGAUACGUcAUCGCUGaGGa -3'
miRNA:   3'- cGCGa---CGUCUGUGCAuUAGCGGUaCC- -5'
24666 5' -51.7 NC_005264.1 + 70639 0.69 0.959297
Target:  5'- cGCGC-GCAGGCGCGUcaacaacaCCGUGGc -3'
miRNA:   3'- -CGCGaCGUCUGUGCAuuagc---GGUACC- -5'
24666 5' -51.7 NC_005264.1 + 72267 0.78 0.541419
Target:  5'- uGCGCUGCAGAgGCGUAcUgGCCGg-- -3'
miRNA:   3'- -CGCGACGUCUgUGCAUuAgCGGUacc -5'
24666 5' -51.7 NC_005264.1 + 162215 0.67 0.978006
Target:  5'- cGCGCUGCcugcGACGCGg----GCCGgcgGGg -3'
miRNA:   3'- -CGCGACGu---CUGUGCauuagCGGUa--CC- -5'
24666 5' -51.7 NC_005264.1 + 111613 0.84 0.296959
Target:  5'- cGCGCUgugGCAGACACGUAGguaCGCCGaGGg -3'
miRNA:   3'- -CGCGA---CGUCUGUGCAUUa--GCGGUaCC- -5'
24666 5' -51.7 NC_005264.1 + 122795 0.68 0.963568
Target:  5'- gGCGCUGCGGGCcCuUGGUCGaCCGc-- -3'
miRNA:   3'- -CGCGACGUCUGuGcAUUAGC-GGUacc -5'
24666 5' -51.7 NC_005264.1 + 149663 0.68 0.972853
Target:  5'- cGCGC-GCAG-CGCGUAGgUCGUCGUc- -3'
miRNA:   3'- -CGCGaCGUCuGUGCAUU-AGCGGUAcc -5'
24666 5' -51.7 NC_005264.1 + 142810 0.69 0.943546
Target:  5'- aCGCUGCacGGGUGCGaGcgCGCCGUGGu -3'
miRNA:   3'- cGCGACG--UCUGUGCaUuaGCGGUACC- -5'
24666 5' -51.7 NC_005264.1 + 94401 0.7 0.922599
Target:  5'- cGCGC-GCAGACcgcggcgcggacuGCGcGAUCGCUgacGUGGg -3'
miRNA:   3'- -CGCGaCGUCUG-------------UGCaUUAGCGG---UACC- -5'
24666 5' -51.7 NC_005264.1 + 39615 0.72 0.847145
Target:  5'- cGCGCuUGCuccuAGACACGg---CGCUGUGGu -3'
miRNA:   3'- -CGCG-ACG----UCUGUGCauuaGCGGUACC- -5'
24666 5' -51.7 NC_005264.1 + 31283 0.75 0.717109
Target:  5'- cGCGCacaUGCAGAaGCGUGAgcuUCGCCGacUGGu -3'
miRNA:   3'- -CGCG---ACGUCUgUGCAUU---AGCGGU--ACC- -5'
24666 5' -51.7 NC_005264.1 + 143887 0.66 0.987705
Target:  5'- gGCGCgGCGGGCGCaacGUCGaUUGUGGg -3'
miRNA:   3'- -CGCGaCGUCUGUGcauUAGC-GGUACC- -5'
24666 5' -51.7 NC_005264.1 + 42060 0.67 0.986096
Target:  5'- cGCGUUGCccgcGGCGCGUGGcgucagcugCGCCG-GGa -3'
miRNA:   3'- -CGCGACGu---CUGUGCAUUa--------GCGGUaCC- -5'
24666 5' -51.7 NC_005264.1 + 34126 0.67 0.98433
Target:  5'- uCGCUGCcucuggugacGGGCGCGUAGgcuucggGUCGUGGu -3'
miRNA:   3'- cGCGACG----------UCUGUGCAUUag-----CGGUACC- -5'
24666 5' -51.7 NC_005264.1 + 123634 0.67 0.982196
Target:  5'- aGCGCcgcggcggcGUAGGCGCGUucucgaaAAUCGCCG-GGc -3'
miRNA:   3'- -CGCGa--------CGUCUGUGCA-------UUAGCGGUaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.