miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24666 5' -51.7 NC_005264.1 + 24419 0.67 0.982399
Target:  5'- aGCGCgacGCAaaGCACGUucUCGCCGcuaUGGc -3'
miRNA:   3'- -CGCGa--CGUc-UGUGCAuuAGCGGU---ACC- -5'
24666 5' -51.7 NC_005264.1 + 3852 0.67 0.986096
Target:  5'- aCGaCcGCAGACucgcagcCGaGGUCGCCGUGGc -3'
miRNA:   3'- cGC-GaCGUCUGu------GCaUUAGCGGUACC- -5'
24666 5' -51.7 NC_005264.1 + 101604 0.67 0.986096
Target:  5'- -aGCUGgAG-CGCGccAUCGCCAacgUGGa -3'
miRNA:   3'- cgCGACgUCuGUGCauUAGCGGU---ACC- -5'
24666 5' -51.7 NC_005264.1 + 82359 0.67 0.986096
Target:  5'- uGUGCcagGCAGGCGCGUcGAUCcgguGCCG-GGc -3'
miRNA:   3'- -CGCGa--CGUCUGUGCA-UUAG----CGGUaCC- -5'
24666 5' -51.7 NC_005264.1 + 23869 0.67 0.985756
Target:  5'- cGCGUUccucugaggauucugGCAGACucugaAccuggaccuucaugcCGUAAUCGCCGUGGc -3'
miRNA:   3'- -CGCGA---------------CGUCUG-----U---------------GCAUUAGCGGUACC- -5'
24666 5' -51.7 NC_005264.1 + 109904 0.67 0.98433
Target:  5'- uGCGCcGCGGGCGCG-----GCCAUGc -3'
miRNA:   3'- -CGCGaCGUCUGUGCauuagCGGUACc -5'
24666 5' -51.7 NC_005264.1 + 95666 0.67 0.983192
Target:  5'- aGCGCUGCAGGC-CGccauccaccccuUCGUCAcagGGa -3'
miRNA:   3'- -CGCGACGUCUGuGCauu---------AGCGGUa--CC- -5'
24666 5' -51.7 NC_005264.1 + 98412 0.67 0.982399
Target:  5'- cCGCgGCAGA--CGUcAUCGCCGUGc -3'
miRNA:   3'- cGCGaCGUCUguGCAuUAGCGGUACc -5'
24666 5' -51.7 NC_005264.1 + 102579 0.67 0.982399
Target:  5'- gGCGCUcaccGCAGcuCGCGUGAcCGCauaCAUGGc -3'
miRNA:   3'- -CGCGA----CGUCu-GUGCAUUaGCG---GUACC- -5'
24666 5' -51.7 NC_005264.1 + 37174 0.66 0.987551
Target:  5'- -aGCUucCGGACAUGUGcccccgcGUgGCCGUGGg -3'
miRNA:   3'- cgCGAc-GUCUGUGCAU-------UAgCGGUACC- -5'
24666 5' -51.7 NC_005264.1 + 39417 0.66 0.987705
Target:  5'- uGCGCUGCucagcgccggAGACAuCGguuUUGCCggGGc -3'
miRNA:   3'- -CGCGACG----------UCUGU-GCauuAGCGGuaCC- -5'
24666 5' -51.7 NC_005264.1 + 98683 0.66 0.987705
Target:  5'- gGCGCuUGCacaccggccGGAuCGCGg---CGCCGUGGc -3'
miRNA:   3'- -CGCG-ACG---------UCU-GUGCauuaGCGGUACC- -5'
24666 5' -51.7 NC_005264.1 + 107980 0.66 0.991682
Target:  5'- aGCGUgaccGUGGAUGCGggcgGcucccaggucacGUCGCCGUGGu -3'
miRNA:   3'- -CGCGa---CGUCUGUGCa---U------------UAGCGGUACC- -5'
24666 5' -51.7 NC_005264.1 + 71273 0.66 0.991682
Target:  5'- cGUGCUGCAGAagccCGUGuacGUUaCUAUGGa -3'
miRNA:   3'- -CGCGACGUCUgu--GCAU---UAGcGGUACC- -5'
24666 5' -51.7 NC_005264.1 + 94635 0.66 0.991568
Target:  5'- cGCGCUGUuuuccguccccauGGAgCACGUA---GCCAUGa -3'
miRNA:   3'- -CGCGACG-------------UCU-GUGCAUuagCGGUACc -5'
24666 5' -51.7 NC_005264.1 + 44789 0.66 0.990489
Target:  5'- uCGUUGCcGACGcCGcGGUCGCCGcGGc -3'
miRNA:   3'- cGCGACGuCUGU-GCaUUAGCGGUaCC- -5'
24666 5' -51.7 NC_005264.1 + 1192 0.66 0.990489
Target:  5'- aCGCaGCGGACcggGCGUccgCGgCCAUGGc -3'
miRNA:   3'- cGCGaCGUCUG---UGCAuuaGC-GGUACC- -5'
24666 5' -51.7 NC_005264.1 + 6944 0.66 0.990363
Target:  5'- gGCGCagGCAGAUACGUcgaccaccaauacAucuucGUCGUCGUGu -3'
miRNA:   3'- -CGCGa-CGUCUGUGCA-------------U-----UAGCGGUACc -5'
24666 5' -51.7 NC_005264.1 + 93442 0.66 0.989167
Target:  5'- aCGCuuuUGUGGcGCAgGUGGUCGCCGcGGa -3'
miRNA:   3'- cGCG---ACGUC-UGUgCAUUAGCGGUaCC- -5'
24666 5' -51.7 NC_005264.1 + 95741 0.66 0.989027
Target:  5'- gGCGCUGgAGACG-------GCCAUGGg -3'
miRNA:   3'- -CGCGACgUCUGUgcauuagCGGUACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.