miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24667 3' -58.7 NC_005264.1 + 5214 0.66 0.866978
Target:  5'- cGCGGCGAG----GCGAAGCucuucuUCCGCGg -3'
miRNA:   3'- -CGCUGCUCagggCGCUUCGc-----AGGCGC- -5'
24667 3' -58.7 NC_005264.1 + 63699 0.66 0.866978
Target:  5'- cGCGGCaaGGUCCCGUgcgagaacccaGAGGCGUCUa-- -3'
miRNA:   3'- -CGCUGc-UCAGGGCG-----------CUUCGCAGGcgc -5'
24667 3' -58.7 NC_005264.1 + 124241 0.66 0.866978
Target:  5'- cGCGGCGAG----GCGAAGCucuucuUCCGCGg -3'
miRNA:   3'- -CGCUGCUCagggCGCUUCGc-----AGGCGC- -5'
24667 3' -58.7 NC_005264.1 + 3739 0.66 0.866261
Target:  5'- aCGACGAGgagcggggccucuUgCCGcCGggGCG-CUGCGg -3'
miRNA:   3'- cGCUGCUC-------------AgGGC-GCuuCGCaGGCGC- -5'
24667 3' -58.7 NC_005264.1 + 122765 0.66 0.866261
Target:  5'- aCGACGAGgagcggggccucuUgCCGcCGggGCG-CUGCGg -3'
miRNA:   3'- cGCUGCUC-------------AgGGC-GCuuCGCaGGCGC- -5'
24667 3' -58.7 NC_005264.1 + 32921 0.66 0.859713
Target:  5'- cGCGcAgGGGU--CGCGggGCG-CCGCGu -3'
miRNA:   3'- -CGC-UgCUCAggGCGCuuCGCaGGCGC- -5'
24667 3' -58.7 NC_005264.1 + 145511 0.66 0.859713
Target:  5'- aGCGGCGAugaugCCUGCGAcauuGGCagGUCuCGCGc -3'
miRNA:   3'- -CGCUGCUca---GGGCGCU----UCG--CAG-GCGC- -5'
24667 3' -58.7 NC_005264.1 + 149426 0.66 0.859713
Target:  5'- gGCGGCG-GUCgCGCGccgguGCGgagagCUGCGg -3'
miRNA:   3'- -CGCUGCuCAGgGCGCuu---CGCa----GGCGC- -5'
24667 3' -58.7 NC_005264.1 + 111001 0.66 0.859713
Target:  5'- gGUGACG---CCCGCGGAGCGcCCa-- -3'
miRNA:   3'- -CGCUGCucaGGGCGCUUCGCaGGcgc -5'
24667 3' -58.7 NC_005264.1 + 83118 0.66 0.859713
Target:  5'- cCGACGGGcgccaaggCCGCGGAggcGCGUCUGCc -3'
miRNA:   3'- cGCUGCUCag------GGCGCUU---CGCAGGCGc -5'
24667 3' -58.7 NC_005264.1 + 30399 0.66 0.859713
Target:  5'- gGCGGCG-GUCgCGCGccgguGCGgagagCUGCGg -3'
miRNA:   3'- -CGCUGCuCAGgGCGCuu---CGCa----GGCGC- -5'
24667 3' -58.7 NC_005264.1 + 153362 0.66 0.859713
Target:  5'- gGCGGCagacaAGaCgCGCGAAGCGUUgCGCGa -3'
miRNA:   3'- -CGCUGc----UCaGgGCGCUUCGCAG-GCGC- -5'
24667 3' -58.7 NC_005264.1 + 52694 0.66 0.858976
Target:  5'- cGCGGCGGGUuucgccgCCCGCccccaaAAGCG-CgGCGg -3'
miRNA:   3'- -CGCUGCUCA-------GGGCGc-----UUCGCaGgCGC- -5'
24667 3' -58.7 NC_005264.1 + 123084 0.66 0.858976
Target:  5'- gGCGACGGGaucUCCCgacaGCGggGCuGUugcacgggcggcgUCGCGg -3'
miRNA:   3'- -CGCUGCUC---AGGG----CGCuuCG-CA-------------GGCGC- -5'
24667 3' -58.7 NC_005264.1 + 4057 0.66 0.858976
Target:  5'- gGCGACGGGaucUCCCgacaGCGggGCuGUugcacgggcggcgUCGCGg -3'
miRNA:   3'- -CGCUGCUC---AGGG----CGCuuCG-CA-------------GGCGC- -5'
24667 3' -58.7 NC_005264.1 + 150616 0.66 0.852258
Target:  5'- uGgGGCGAGUCUgcucucugGCGAGGCGg-CGCGc -3'
miRNA:   3'- -CgCUGCUCAGGg-------CGCUUCGCagGCGC- -5'
24667 3' -58.7 NC_005264.1 + 152607 0.66 0.852258
Target:  5'- cGCGucguuCGGGUcaCCCGCGgcGCGUuuGg- -3'
miRNA:   3'- -CGCu----GCUCA--GGGCGCuuCGCAggCgc -5'
24667 3' -58.7 NC_005264.1 + 151861 0.66 0.852258
Target:  5'- gGCGGCGAcaCgUGgGggGCGUCuuCGCGg -3'
miRNA:   3'- -CGCUGCUcaGgGCgCuuCGCAG--GCGC- -5'
24667 3' -58.7 NC_005264.1 + 31589 0.66 0.852258
Target:  5'- uGgGGCGAGUCUgcucucugGCGAGGCGg-CGCGc -3'
miRNA:   3'- -CgCUGCUCAGGg-------CGCUUCGCagGCGC- -5'
24667 3' -58.7 NC_005264.1 + 93247 0.66 0.852258
Target:  5'- gGCGGCGcc-CUCGuCGgcGCGUUCGCGc -3'
miRNA:   3'- -CGCUGCucaGGGC-GCuuCGCAGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.