miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24667 3' -58.7 NC_005264.1 + 5214 0.66 0.866978
Target:  5'- cGCGGCGAG----GCGAAGCucuucuUCCGCGg -3'
miRNA:   3'- -CGCUGCUCagggCGCUUCGc-----AGGCGC- -5'
24667 3' -58.7 NC_005264.1 + 44781 0.66 0.84462
Target:  5'- cGCGGCGAucGUUgCCGaCGccGCGgucgCCGCGg -3'
miRNA:   3'- -CGCUGCU--CAG-GGC-GCuuCGCa---GGCGC- -5'
24667 3' -58.7 NC_005264.1 + 24397 0.66 0.84462
Target:  5'- gGCGGCGAGguagaUCGCGAgcAGCGcgaCGCa -3'
miRNA:   3'- -CGCUGCUCag---GGCGCU--UCGCag-GCGc -5'
24667 3' -58.7 NC_005264.1 + 3803 0.66 0.84462
Target:  5'- uGCGugGcGGU-CCGCGAguucgggcccgGGCGgggCCGCa -3'
miRNA:   3'- -CGCugC-UCAgGGCGCU-----------UCGCa--GGCGc -5'
24667 3' -58.7 NC_005264.1 + 41322 0.66 0.836803
Target:  5'- cGCG-CGAGgCCCGCcgaccaucgucGAAGCaG-CCGCGa -3'
miRNA:   3'- -CGCuGCUCaGGGCG-----------CUUCG-CaGGCGC- -5'
24667 3' -58.7 NC_005264.1 + 100534 0.66 0.83203
Target:  5'- -gGGCGGGUCUaguccggacgacgcuCGCGGgcauguugaAGCGUgCCGCGa -3'
miRNA:   3'- cgCUGCUCAGG---------------GCGCU---------UCGCA-GGCGC- -5'
24667 3' -58.7 NC_005264.1 + 93028 0.66 0.828815
Target:  5'- gGCGGCGucGUCCgCGcCGAAuGCGUgCUGCu -3'
miRNA:   3'- -CGCUGCu-CAGG-GC-GCUU-CGCA-GGCGc -5'
24667 3' -58.7 NC_005264.1 + 80055 0.66 0.828815
Target:  5'- cGCGuCGAGcCCUGUGAAGUcucucaUCUGCGc -3'
miRNA:   3'- -CGCuGCUCaGGGCGCUUCGc-----AGGCGC- -5'
24667 3' -58.7 NC_005264.1 + 66531 0.66 0.828815
Target:  5'- cUGACGAcgaCCGCGuugcGGGCGUCgGCGa -3'
miRNA:   3'- cGCUGCUcagGGCGC----UUCGCAGgCGC- -5'
24667 3' -58.7 NC_005264.1 + 31589 0.66 0.852258
Target:  5'- uGgGGCGAGUCUgcucucugGCGAGGCGg-CGCGc -3'
miRNA:   3'- -CgCUGCUCAGGg-------CGCUUCGCagGCGC- -5'
24667 3' -58.7 NC_005264.1 + 65389 0.66 0.852258
Target:  5'- aGCGGCGcuacgucuaucAGaUCCGCGGcGGCGcCCGCa -3'
miRNA:   3'- -CGCUGC-----------UCaGGGCGCU-UCGCaGGCGc -5'
24667 3' -58.7 NC_005264.1 + 151861 0.66 0.852258
Target:  5'- gGCGGCGAcaCgUGgGggGCGUCuuCGCGg -3'
miRNA:   3'- -CGCUGCUcaGgGCgCuuCGCAG--GCGC- -5'
24667 3' -58.7 NC_005264.1 + 63699 0.66 0.866978
Target:  5'- cGCGGCaaGGUCCCGUgcgagaacccaGAGGCGUCUa-- -3'
miRNA:   3'- -CGCUGc-UCAGGGCG-----------CUUCGCAGGcgc -5'
24667 3' -58.7 NC_005264.1 + 3739 0.66 0.866261
Target:  5'- aCGACGAGgagcggggccucuUgCCGcCGggGCG-CUGCGg -3'
miRNA:   3'- cGCUGCUC-------------AgGGC-GCuuCGCaGGCGC- -5'
24667 3' -58.7 NC_005264.1 + 153362 0.66 0.859713
Target:  5'- gGCGGCagacaAGaCgCGCGAAGCGUUgCGCGa -3'
miRNA:   3'- -CGCUGc----UCaGgGCGCUUCGCAG-GCGC- -5'
24667 3' -58.7 NC_005264.1 + 83118 0.66 0.859713
Target:  5'- cCGACGGGcgccaaggCCGCGGAggcGCGUCUGCc -3'
miRNA:   3'- cGCUGCUCag------GGCGCUU---CGCAGGCGc -5'
24667 3' -58.7 NC_005264.1 + 30399 0.66 0.859713
Target:  5'- gGCGGCG-GUCgCGCGccgguGCGgagagCUGCGg -3'
miRNA:   3'- -CGCUGCuCAGgGCGCuu---CGCa----GGCGC- -5'
24667 3' -58.7 NC_005264.1 + 4057 0.66 0.858976
Target:  5'- gGCGACGGGaucUCCCgacaGCGggGCuGUugcacgggcggcgUCGCGg -3'
miRNA:   3'- -CGCUGCUC---AGGG----CGCuuCG-CA-------------GGCGC- -5'
24667 3' -58.7 NC_005264.1 + 93247 0.66 0.852258
Target:  5'- gGCGGCGcc-CUCGuCGgcGCGUUCGCGc -3'
miRNA:   3'- -CGCUGCucaGGGC-GCuuCGCAGGCGC- -5'
24667 3' -58.7 NC_005264.1 + 33580 0.66 0.852258
Target:  5'- cGCGucguuCGGGUcaCCCGCGgcGCGUuuGg- -3'
miRNA:   3'- -CGCu----GCUCA--GGGCGCuuCGCAggCgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.