miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24667 3' -58.7 NC_005264.1 + 103069 1.1 0.002046
Target:  5'- gGCGACGAGUCCCGCGAAGCGUCCGCGu -3'
miRNA:   3'- -CGCUGCUCAGGGCGCUUCGCAGGCGC- -5'
24667 3' -58.7 NC_005264.1 + 32375 0.75 0.348432
Target:  5'- cUGGCGAGgaugCCgGCGGccGGCGUCCGCc -3'
miRNA:   3'- cGCUGCUCa---GGgCGCU--UCGCAGGCGc -5'
24667 3' -58.7 NC_005264.1 + 151402 0.75 0.348432
Target:  5'- cUGGCGAGgaugCCgGCGGccGGCGUCCGCc -3'
miRNA:   3'- cGCUGCUCa---GGgCGCU--UCGCAGGCGc -5'
24667 3' -58.7 NC_005264.1 + 131049 0.75 0.355945
Target:  5'- gGCGGCGAccgccgCCCuuagGCGAAGCGcCCGCGa -3'
miRNA:   3'- -CGCUGCUca----GGG----CGCUUCGCaGGCGC- -5'
24667 3' -58.7 NC_005264.1 + 12022 0.75 0.355945
Target:  5'- gGCGGCGAccgccgCCCuuagGCGAAGCGcCCGCGa -3'
miRNA:   3'- -CGCUGCUca----GGG----CGCUUCGCaGGCGC- -5'
24667 3' -58.7 NC_005264.1 + 123515 0.74 0.398453
Target:  5'- cGCG-CGAGggUCGCGAgcggaggggggacugGGCGUCCGCGg -3'
miRNA:   3'- -CGCuGCUCagGGCGCU---------------UCGCAGGCGC- -5'
24667 3' -58.7 NC_005264.1 + 4488 0.74 0.398453
Target:  5'- cGCG-CGAGggUCGCGAgcggaggggggacugGGCGUCCGCGg -3'
miRNA:   3'- -CGCuGCUCagGGCGCU---------------UCGCAGGCGC- -5'
24667 3' -58.7 NC_005264.1 + 54353 0.74 0.411658
Target:  5'- aUGGCGAG-CCUuaGAAGCGUCgCGCGg -3'
miRNA:   3'- cGCUGCUCaGGGcgCUUCGCAG-GCGC- -5'
24667 3' -58.7 NC_005264.1 + 56971 0.74 0.420047
Target:  5'- gGCGACGAGUCCCuCGucGC--CCGCGc -3'
miRNA:   3'- -CGCUGCUCAGGGcGCuuCGcaGGCGC- -5'
24667 3' -58.7 NC_005264.1 + 26294 0.74 0.428539
Target:  5'- cGCGAuCGGcUCCCGCGucuuCGUCCGCGu -3'
miRNA:   3'- -CGCU-GCUcAGGGCGCuuc-GCAGGCGC- -5'
24667 3' -58.7 NC_005264.1 + 99194 0.74 0.437131
Target:  5'- aCGugGGGUCCuCGC-AGGCcUCCGCGg -3'
miRNA:   3'- cGCugCUCAGG-GCGcUUCGcAGGCGC- -5'
24667 3' -58.7 NC_005264.1 + 51799 0.73 0.463488
Target:  5'- cCGGCGAGUCCgCGCGA-GCcaCCGCu -3'
miRNA:   3'- cGCUGCUCAGG-GCGCUuCGcaGGCGc -5'
24667 3' -58.7 NC_005264.1 + 87526 0.72 0.509167
Target:  5'- uCGAUGAGccgCCCGCGGccuccgaggAGuCGUCCGCa -3'
miRNA:   3'- cGCUGCUCa--GGGCGCU---------UC-GCAGGCGc -5'
24667 3' -58.7 NC_005264.1 + 33855 0.72 0.509167
Target:  5'- cGCGGCaGAG-CUgaagaaCGUGGAGCGUCCGCu -3'
miRNA:   3'- -CGCUG-CUCaGG------GCGCUUCGCAGGCGc -5'
24667 3' -58.7 NC_005264.1 + 156608 0.72 0.518534
Target:  5'- gGCGGCaAGUCUCGCG--GCGgCCGCGg -3'
miRNA:   3'- -CGCUGcUCAGGGCGCuuCGCaGGCGC- -5'
24667 3' -58.7 NC_005264.1 + 37581 0.72 0.518534
Target:  5'- gGCGGCaAGUCUCGCG--GCGgCCGCGg -3'
miRNA:   3'- -CGCUGcUCAGGGCGCuuCGCaGGCGC- -5'
24667 3' -58.7 NC_005264.1 + 71860 0.72 0.527968
Target:  5'- gGCGGCGGuGUUCCGCGAcggcacgcgGGCGcCCGaCGc -3'
miRNA:   3'- -CGCUGCU-CAGGGCGCU---------UCGCaGGC-GC- -5'
24667 3' -58.7 NC_005264.1 + 120207 0.72 0.547022
Target:  5'- cGCGAUGGGgguaCgcaGCGGaccgGGCGUCCGCGg -3'
miRNA:   3'- -CGCUGCUCag--Gg--CGCU----UCGCAGGCGC- -5'
24667 3' -58.7 NC_005264.1 + 1180 0.72 0.547022
Target:  5'- cGCGAUGGGgguaCgcaGCGGaccgGGCGUCCGCGg -3'
miRNA:   3'- -CGCUGCUCag--Gg--CGCU----UCGCAGGCGC- -5'
24667 3' -58.7 NC_005264.1 + 90803 0.71 0.556631
Target:  5'- cGCGAUGGaggucagccGUCUCGCGuguGGCGgCCGCGc -3'
miRNA:   3'- -CGCUGCU---------CAGGGCGCu--UCGCaGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.