miRNA display CGI


Results 21 - 40 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24667 3' -58.7 NC_005264.1 + 100203 0.71 0.579878
Target:  5'- cGCGACuucgcuGAGcUCCGCGggGCGcaguugcucggaacgUCCGCGc -3'
miRNA:   3'- -CGCUG------CUCaGGGCGCuuCGC---------------AGGCGC- -5'
24667 3' -58.7 NC_005264.1 + 129548 0.71 0.595491
Target:  5'- cCGAgCGGGUCCUGUGcGGCG-CCGCc -3'
miRNA:   3'- cGCU-GCUCAGGGCGCuUCGCaGGCGc -5'
24667 3' -58.7 NC_005264.1 + 10521 0.71 0.595491
Target:  5'- cCGAgCGGGUCCUGUGcGGCG-CCGCc -3'
miRNA:   3'- cGCU-GCUCAGGGCGCuUCGCaGGCGc -5'
24667 3' -58.7 NC_005264.1 + 100612 0.71 0.595491
Target:  5'- cCGACGA--CCC-CGAAGCGgCCGCGg -3'
miRNA:   3'- cGCUGCUcaGGGcGCUUCGCaGGCGC- -5'
24667 3' -58.7 NC_005264.1 + 62725 0.71 0.595491
Target:  5'- cGCGACGAuUCCCGCaaccGCGUcgucgcugagccCCGCGg -3'
miRNA:   3'- -CGCUGCUcAGGGCGcuu-CGCA------------GGCGC- -5'
24667 3' -58.7 NC_005264.1 + 20261 0.71 0.595491
Target:  5'- uGCGGCGcGGcCUCGCGGAGgggacCGUCUGCGc -3'
miRNA:   3'- -CGCUGC-UCaGGGCGCUUC-----GCAGGCGC- -5'
24667 3' -58.7 NC_005264.1 + 27919 0.7 0.615094
Target:  5'- aGCGACGAcgaCCGCGGuguuGGCGuUCUGCGc -3'
miRNA:   3'- -CGCUGCUcagGGCGCU----UCGC-AGGCGC- -5'
24667 3' -58.7 NC_005264.1 + 6233 0.7 0.634744
Target:  5'- -aGACGGGUUCUGCG--GCGgccCCGCGg -3'
miRNA:   3'- cgCUGCUCAGGGCGCuuCGCa--GGCGC- -5'
24667 3' -58.7 NC_005264.1 + 61491 0.7 0.664187
Target:  5'- cCGACGcGcCCCGCGGucucggcuAGCG-CCGCGc -3'
miRNA:   3'- cGCUGCuCaGGGCGCU--------UCGCaGGCGC- -5'
24667 3' -58.7 NC_005264.1 + 130526 0.69 0.673963
Target:  5'- cCGGCGAGauagaCCugCGCGAAGCGU-CGCGg -3'
miRNA:   3'- cGCUGCUCa----GG--GCGCUUCGCAgGCGC- -5'
24667 3' -58.7 NC_005264.1 + 6315 0.69 0.673963
Target:  5'- cGCGGCGAGgcuUCGCGuGGCGUacaCGCa -3'
miRNA:   3'- -CGCUGCUCag-GGCGCuUCGCAg--GCGc -5'
24667 3' -58.7 NC_005264.1 + 125939 0.69 0.679814
Target:  5'- gGCGACGAggaauuaauaccuGUCUCGCGcugaacuauuuguuGGGCGUgCUGCGg -3'
miRNA:   3'- -CGCUGCU-------------CAGGGCGC--------------UUCGCA-GGCGC- -5'
24667 3' -58.7 NC_005264.1 + 99881 0.69 0.683708
Target:  5'- -gGGCGAGUCCgGaCGcuaAAGCGUCgaCGCGa -3'
miRNA:   3'- cgCUGCUCAGGgC-GC---UUCGCAG--GCGC- -5'
24667 3' -58.7 NC_005264.1 + 110823 0.69 0.683708
Target:  5'- aGCGuuCGGGUCUgaGCGggGuCGcUCCGCGc -3'
miRNA:   3'- -CGCu-GCUCAGGg-CGCuuC-GC-AGGCGC- -5'
24667 3' -58.7 NC_005264.1 + 18015 0.69 0.692445
Target:  5'- gGCGGCGGGUCggCCGCGGucaGGUuaaccauGUCgGCGg -3'
miRNA:   3'- -CGCUGCUCAG--GGCGCU---UCG-------CAGgCGC- -5'
24667 3' -58.7 NC_005264.1 + 127329 0.69 0.693413
Target:  5'- gGCGACGGGggcaCCUGCGccGCGgcgUCGCc -3'
miRNA:   3'- -CGCUGCUCa---GGGCGCuuCGCa--GGCGc -5'
24667 3' -58.7 NC_005264.1 + 8302 0.69 0.693413
Target:  5'- gGCGACGGGggcaCCUGCGccGCGgcgUCGCc -3'
miRNA:   3'- -CGCUGCUCa---GGGCGCuuCGCa--GGCGc -5'
24667 3' -58.7 NC_005264.1 + 42761 0.69 0.703072
Target:  5'- gGC-ACGAcUCCCGCuagccGGCGUCCGCc -3'
miRNA:   3'- -CGcUGCUcAGGGCGcu---UCGCAGGCGc -5'
24667 3' -58.7 NC_005264.1 + 25537 0.69 0.712675
Target:  5'- uGCGAUGGGUgccguacgCCCGCGucGCcgccaacgCCGCGg -3'
miRNA:   3'- -CGCUGCUCA--------GGGCGCuuCGca------GGCGC- -5'
24667 3' -58.7 NC_005264.1 + 90100 0.69 0.712675
Target:  5'- aGCgGACaGG-CCCGcCGAAGUGUaCCGCGu -3'
miRNA:   3'- -CG-CUGcUCaGGGC-GCUUCGCA-GGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.