Results 21 - 40 of 113 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24667 | 3' | -58.7 | NC_005264.1 | + | 65389 | 0.66 | 0.852258 |
Target: 5'- aGCGGCGcuacgucuaucAGaUCCGCGGcGGCGcCCGCa -3' miRNA: 3'- -CGCUGC-----------UCaGGGCGCU-UCGCaGGCGc -5' |
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24667 | 3' | -58.7 | NC_005264.1 | + | 151861 | 0.66 | 0.852258 |
Target: 5'- gGCGGCGAcaCgUGgGggGCGUCuuCGCGg -3' miRNA: 3'- -CGCUGCUcaGgGCgCuuCGCAG--GCGC- -5' |
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24667 | 3' | -58.7 | NC_005264.1 | + | 122829 | 0.66 | 0.84462 |
Target: 5'- uGCGugGcGGU-CCGCGAguucgggcccgGGCGgggCCGCa -3' miRNA: 3'- -CGCugC-UCAgGGCGCU-----------UCGCa--GGCGc -5' |
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24667 | 3' | -58.7 | NC_005264.1 | + | 57983 | 0.66 | 0.84462 |
Target: 5'- ----gGAGUcCCCGCGcGGCGgCCGUGg -3' miRNA: 3'- cgcugCUCA-GGGCGCuUCGCaGGCGC- -5' |
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24667 | 3' | -58.7 | NC_005264.1 | + | 59982 | 0.66 | 0.84462 |
Target: 5'- cGCGGCGGuGg-CCGCGAGcgagacggccGCGUggCCGCGg -3' miRNA: 3'- -CGCUGCU-CagGGCGCUU----------CGCA--GGCGC- -5' |
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24667 | 3' | -58.7 | NC_005264.1 | + | 3803 | 0.66 | 0.84462 |
Target: 5'- uGCGugGcGGU-CCGCGAguucgggcccgGGCGgggCCGCa -3' miRNA: 3'- -CGCugC-UCAgGGCGCU-----------UCGCa--GGCGc -5' |
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24667 | 3' | -58.7 | NC_005264.1 | + | 24397 | 0.66 | 0.84462 |
Target: 5'- gGCGGCGAGguagaUCGCGAgcAGCGcgaCGCa -3' miRNA: 3'- -CGCUGCUCag---GGCGCU--UCGCag-GCGc -5' |
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24667 | 3' | -58.7 | NC_005264.1 | + | 44781 | 0.66 | 0.84462 |
Target: 5'- cGCGGCGAucGUUgCCGaCGccGCGgucgCCGCGg -3' miRNA: 3'- -CGCUGCU--CAG-GGC-GCuuCGCa---GGCGC- -5' |
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24667 | 3' | -58.7 | NC_005264.1 | + | 96329 | 0.66 | 0.836803 |
Target: 5'- cGCGaaaGCGAG-CUCGUcGAGCGcgCCGCGc -3' miRNA: 3'- -CGC---UGCUCaGGGCGcUUCGCa-GGCGC- -5' |
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24667 | 3' | -58.7 | NC_005264.1 | + | 160349 | 0.66 | 0.836803 |
Target: 5'- cGCG-CGAGgCCCGCcgaccaucgucGAAGCaG-CCGCGa -3' miRNA: 3'- -CGCuGCUCaGGGCG-----------CUUCG-CaGGCGC- -5' |
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24667 | 3' | -58.7 | NC_005264.1 | + | 82946 | 0.66 | 0.836803 |
Target: 5'- uGCGACGucgCCUGCGAcGGuCGccgCCGCGc -3' miRNA: 3'- -CGCUGCucaGGGCGCU-UC-GCa--GGCGC- -5' |
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24667 | 3' | -58.7 | NC_005264.1 | + | 41322 | 0.66 | 0.836803 |
Target: 5'- cGCG-CGAGgCCCGCcgaccaucgucGAAGCaG-CCGCGa -3' miRNA: 3'- -CGCuGCUCaGGGCG-----------CUUCG-CaGGCGC- -5' |
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24667 | 3' | -58.7 | NC_005264.1 | + | 46590 | 0.66 | 0.836012 |
Target: 5'- cGCGuGCGGaggcucuGUCCCuGCGggGCGaggacggcUCCGUGc -3' miRNA: 3'- -CGC-UGCU-------CAGGG-CGCuuCGC--------AGGCGC- -5' |
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24667 | 3' | -58.7 | NC_005264.1 | + | 100534 | 0.66 | 0.83203 |
Target: 5'- -gGGCGGGUCUaguccggacgacgcuCGCGGgcauguugaAGCGUgCCGCGa -3' miRNA: 3'- cgCUGCUCAGG---------------GCGCU---------UCGCA-GGCGC- -5' |
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24667 | 3' | -58.7 | NC_005264.1 | + | 93028 | 0.66 | 0.828815 |
Target: 5'- gGCGGCGucGUCCgCGcCGAAuGCGUgCUGCu -3' miRNA: 3'- -CGCUGCu-CAGG-GC-GCUU-CGCA-GGCGc -5' |
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24667 | 3' | -58.7 | NC_005264.1 | + | 80055 | 0.66 | 0.828815 |
Target: 5'- cGCGuCGAGcCCUGUGAAGUcucucaUCUGCGc -3' miRNA: 3'- -CGCuGCUCaGGGCGCUUCGc-----AGGCGC- -5' |
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24667 | 3' | -58.7 | NC_005264.1 | + | 66531 | 0.66 | 0.828815 |
Target: 5'- cUGACGAcgaCCGCGuugcGGGCGUCgGCGa -3' miRNA: 3'- cGCUGCUcagGGCGC----UUCGCAGgCGC- -5' |
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24667 | 3' | -58.7 | NC_005264.1 | + | 124319 | 0.67 | 0.820661 |
Target: 5'- gGCGGCGGcuGaCCCGUGggGCGg--GCGa -3' miRNA: 3'- -CGCUGCU--CaGGGCGCuuCGCaggCGC- -5' |
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24667 | 3' | -58.7 | NC_005264.1 | + | 116459 | 0.67 | 0.820661 |
Target: 5'- cUGACGA--CCCGCGuaucGGUGUCCuGCGc -3' miRNA: 3'- cGCUGCUcaGGGCGCu---UCGCAGG-CGC- -5' |
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24667 | 3' | -58.7 | NC_005264.1 | + | 121553 | 0.67 | 0.820661 |
Target: 5'- aGCGugGaAGUCgaCGCG-GGCGggCCGCu -3' miRNA: 3'- -CGCugC-UCAGg-GCGCuUCGCa-GGCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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