miRNA display CGI


Results 41 - 60 of 113 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24667 3' -58.7 NC_005264.1 + 5292 0.67 0.820661
Target:  5'- gGCGGCGGcuGaCCCGUGggGCGg--GCGa -3'
miRNA:   3'- -CGCUGCU--CaGGGCGCuuCGCaggCGC- -5'
24667 3' -58.7 NC_005264.1 + 124319 0.67 0.820661
Target:  5'- gGCGGCGGcuGaCCCGUGggGCGg--GCGa -3'
miRNA:   3'- -CGCUGCU--CaGGGCGCuuCGCaggCGC- -5'
24667 3' -58.7 NC_005264.1 + 21227 0.67 0.819837
Target:  5'- cGCGACGGcuUUCCGCGuugacgacggcucGAGUGUgCGCGc -3'
miRNA:   3'- -CGCUGCUc-AGGGCGC-------------UUCGCAgGCGC- -5'
24667 3' -58.7 NC_005264.1 + 50189 0.67 0.81235
Target:  5'- cUGACGcgucGUCaucaaaCGCGAAcGCGUCUGCGu -3'
miRNA:   3'- cGCUGCu---CAGg-----GCGCUU-CGCAGGCGC- -5'
24667 3' -58.7 NC_005264.1 + 122407 0.67 0.81235
Target:  5'- gGCGGCGAGggcuucUCCggaaCGCGggGUcgGUgCGCGg -3'
miRNA:   3'- -CGCUGCUC------AGG----GCGCuuCG--CAgGCGC- -5'
24667 3' -58.7 NC_005264.1 + 161781 0.67 0.81235
Target:  5'- uGCGGCGAGcCuCCGCacgguGGAGCaagaaCCGCGa -3'
miRNA:   3'- -CGCUGCUCaG-GGCG-----CUUCGca---GGCGC- -5'
24667 3' -58.7 NC_005264.1 + 3380 0.67 0.81235
Target:  5'- gGCGGCGAGggcuucUCCggaaCGCGggGUcgGUgCGCGg -3'
miRNA:   3'- -CGCUGCUC------AGG----GCGCuuCG--CAgGCGC- -5'
24667 3' -58.7 NC_005264.1 + 52969 0.67 0.81235
Target:  5'- cGCGGCG-GUgCUGCGAacucaGGCgGUgCGCGa -3'
miRNA:   3'- -CGCUGCuCAgGGCGCU-----UCG-CAgGCGC- -5'
24667 3' -58.7 NC_005264.1 + 6857 0.67 0.811511
Target:  5'- uUGcCGGGaacuaUCCCGaCGGcagccagAGCGUCCGCGa -3'
miRNA:   3'- cGCuGCUC-----AGGGC-GCU-------UCGCAGGCGC- -5'
24667 3' -58.7 NC_005264.1 + 155246 0.67 0.803888
Target:  5'- cGCaGACcaGAG-CCCGCGAgguuuaggGGCGgagCCGCa -3'
miRNA:   3'- -CG-CUG--CUCaGGGCGCU--------UCGCa--GGCGc -5'
24667 3' -58.7 NC_005264.1 + 22009 0.67 0.803888
Target:  5'- cGCGGCGcGUagguuuuuugCCCGCGA-GCGUUCGg- -3'
miRNA:   3'- -CGCUGCuCA----------GGGCGCUuCGCAGGCgc -5'
24667 3' -58.7 NC_005264.1 + 36219 0.67 0.803888
Target:  5'- cGCaGACcaGAG-CCCGCGAgguuuaggGGCGgagCCGCa -3'
miRNA:   3'- -CG-CUG--CUCaGGGCGCU--------UCGCa--GGCGc -5'
24667 3' -58.7 NC_005264.1 + 87051 0.67 0.803888
Target:  5'- gGCGACGA--CCUG-GAGGCGagCGCGa -3'
miRNA:   3'- -CGCUGCUcaGGGCgCUUCGCagGCGC- -5'
24667 3' -58.7 NC_005264.1 + 129869 0.67 0.786541
Target:  5'- uGCG-CGAG-CCCGCGu-GUcUCCGCa -3'
miRNA:   3'- -CGCuGCUCaGGGCGCuuCGcAGGCGc -5'
24667 3' -58.7 NC_005264.1 + 123296 0.67 0.786541
Target:  5'- cGCG-CGGGaaCCGCGggGCGgCgGCa -3'
miRNA:   3'- -CGCuGCUCagGGCGCuuCGCaGgCGc -5'
24667 3' -58.7 NC_005264.1 + 34629 0.67 0.786541
Target:  5'- -----aAGgCCCGCGggGUGUUCGCGg -3'
miRNA:   3'- cgcugcUCaGGGCGCuuCGCAGGCGC- -5'
24667 3' -58.7 NC_005264.1 + 10843 0.67 0.786541
Target:  5'- uGCG-CGAG-CCCGCGu-GUcUCCGCa -3'
miRNA:   3'- -CGCuGCUCaGGGCGCuuCGcAGGCGc -5'
24667 3' -58.7 NC_005264.1 + 4269 0.67 0.786541
Target:  5'- cGCG-CGGGaaCCGCGggGCGgCgGCa -3'
miRNA:   3'- -CGCuGCUCagGGCGCuuCGCaGgCGc -5'
24667 3' -58.7 NC_005264.1 + 116420 0.67 0.777672
Target:  5'- cGCGGCaGGUCgCUG-GggGCGUcuggCCGCGg -3'
miRNA:   3'- -CGCUGcUCAG-GGCgCuuCGCA----GGCGC- -5'
24667 3' -58.7 NC_005264.1 + 84133 0.67 0.776778
Target:  5'- cGCGgcagcucGCGAGcCCCGgGAAGUGgUCGCa -3'
miRNA:   3'- -CGC-------UGCUCaGGGCgCUUCGCaGGCGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.