miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24667 3' -58.7 NC_005264.1 + 1180 0.72 0.547022
Target:  5'- cGCGAUGGGgguaCgcaGCGGaccgGGCGUCCGCGg -3'
miRNA:   3'- -CGCUGCUCag--Gg--CGCU----UCGCAGGCGC- -5'
24667 3' -58.7 NC_005264.1 + 3380 0.67 0.81235
Target:  5'- gGCGGCGAGggcuucUCCggaaCGCGggGUcgGUgCGCGg -3'
miRNA:   3'- -CGCUGCUC------AGG----GCGCuuCG--CAgGCGC- -5'
24667 3' -58.7 NC_005264.1 + 3739 0.66 0.866261
Target:  5'- aCGACGAGgagcggggccucuUgCCGcCGggGCG-CUGCGg -3'
miRNA:   3'- cGCUGCUC-------------AgGGC-GCuuCGCaGGCGC- -5'
24667 3' -58.7 NC_005264.1 + 3803 0.66 0.84462
Target:  5'- uGCGugGcGGU-CCGCGAguucgggcccgGGCGgggCCGCa -3'
miRNA:   3'- -CGCugC-UCAgGGCGCU-----------UCGCa--GGCGc -5'
24667 3' -58.7 NC_005264.1 + 4057 0.66 0.858976
Target:  5'- gGCGACGGGaucUCCCgacaGCGggGCuGUugcacgggcggcgUCGCGg -3'
miRNA:   3'- -CGCUGCUC---AGGG----CGCuuCG-CA-------------GGCGC- -5'
24667 3' -58.7 NC_005264.1 + 4269 0.67 0.786541
Target:  5'- cGCG-CGGGaaCCGCGggGCGgCgGCa -3'
miRNA:   3'- -CGCuGCUCagGGCGCuuCGCaGgCGc -5'
24667 3' -58.7 NC_005264.1 + 4488 0.74 0.398453
Target:  5'- cGCG-CGAGggUCGCGAgcggaggggggacugGGCGUCCGCGg -3'
miRNA:   3'- -CGCuGCUCagGGCGCU---------------UCGCAGGCGC- -5'
24667 3' -58.7 NC_005264.1 + 5214 0.66 0.866978
Target:  5'- cGCGGCGAG----GCGAAGCucuucuUCCGCGg -3'
miRNA:   3'- -CGCUGCUCagggCGCUUCGc-----AGGCGC- -5'
24667 3' -58.7 NC_005264.1 + 5292 0.67 0.820661
Target:  5'- gGCGGCGGcuGaCCCGUGggGCGg--GCGa -3'
miRNA:   3'- -CGCUGCU--CaGGGCGCuuCGCaggCGC- -5'
24667 3' -58.7 NC_005264.1 + 5533 0.68 0.750375
Target:  5'- cGCGGCGucUCgCGCGGAGCGgguuucucUUCGCa -3'
miRNA:   3'- -CGCUGCucAGgGCGCUUCGC--------AGGCGc -5'
24667 3' -58.7 NC_005264.1 + 6233 0.7 0.634744
Target:  5'- -aGACGGGUUCUGCG--GCGgccCCGCGg -3'
miRNA:   3'- cgCUGCUCAGGGCGCuuCGCa--GGCGC- -5'
24667 3' -58.7 NC_005264.1 + 6315 0.69 0.673963
Target:  5'- cGCGGCGAGgcuUCGCGuGGCGUacaCGCa -3'
miRNA:   3'- -CGCUGCUCag-GGCGCuUCGCAg--GCGc -5'
24667 3' -58.7 NC_005264.1 + 6857 0.67 0.811511
Target:  5'- uUGcCGGGaacuaUCCCGaCGGcagccagAGCGUCCGCGa -3'
miRNA:   3'- cGCuGCUC-----AGGGC-GCU-------UCGCAGGCGC- -5'
24667 3' -58.7 NC_005264.1 + 8302 0.69 0.693413
Target:  5'- gGCGACGGGggcaCCUGCGccGCGgcgUCGCc -3'
miRNA:   3'- -CGCUGCUCa---GGGCGCuuCGCa--GGCGc -5'
24667 3' -58.7 NC_005264.1 + 10077 0.68 0.759581
Target:  5'- cGCGGCGGaaucUCCCGCcgGggGCaucgcggccguGUCCGUGa -3'
miRNA:   3'- -CGCUGCUc---AGGGCG--CuuCG-----------CAGGCGC- -5'
24667 3' -58.7 NC_005264.1 + 10521 0.71 0.595491
Target:  5'- cCGAgCGGGUCCUGUGcGGCG-CCGCc -3'
miRNA:   3'- cGCU-GCUCAGGGCGCuUCGCaGGCGc -5'
24667 3' -58.7 NC_005264.1 + 10843 0.67 0.786541
Target:  5'- uGCG-CGAG-CCCGCGu-GUcUCCGCa -3'
miRNA:   3'- -CGCuGCUCaGGGCGCuuCGcAGGCGc -5'
24667 3' -58.7 NC_005264.1 + 12022 0.75 0.355945
Target:  5'- gGCGGCGAccgccgCCCuuagGCGAAGCGcCCGCGa -3'
miRNA:   3'- -CGCUGCUca----GGG----CGCUUCGCaGGCGC- -5'
24667 3' -58.7 NC_005264.1 + 13271 0.68 0.768682
Target:  5'- aCGACGAGgguucgcgCCaGCGAGGCGggUCGUGg -3'
miRNA:   3'- cGCUGCUCa-------GGgCGCUUCGCa-GGCGC- -5'
24667 3' -58.7 NC_005264.1 + 18015 0.69 0.692445
Target:  5'- gGCGGCGGGUCggCCGCGGucaGGUuaaccauGUCgGCGg -3'
miRNA:   3'- -CGCUGCUCAG--GGCGCU---UCG-------CAGgCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.