miRNA display CGI


Results 21 - 40 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24667 3' -58.7 NC_005264.1 + 20261 0.71 0.595491
Target:  5'- uGCGGCGcGGcCUCGCGGAGgggacCGUCUGCGc -3'
miRNA:   3'- -CGCUGC-UCaGGGCGCUUC-----GCAGGCGC- -5'
24667 3' -58.7 NC_005264.1 + 21227 0.67 0.819837
Target:  5'- cGCGACGGcuUUCCGCGuugacgacggcucGAGUGUgCGCGc -3'
miRNA:   3'- -CGCUGCUc-AGGGCGC-------------UUCGCAgGCGC- -5'
24667 3' -58.7 NC_005264.1 + 22009 0.67 0.803888
Target:  5'- cGCGGCGcGUagguuuuuugCCCGCGA-GCGUUCGg- -3'
miRNA:   3'- -CGCUGCuCA----------GGGCGCUuCGCAGGCgc -5'
24667 3' -58.7 NC_005264.1 + 24397 0.66 0.84462
Target:  5'- gGCGGCGAGguagaUCGCGAgcAGCGcgaCGCa -3'
miRNA:   3'- -CGCUGCUCag---GGCGCU--UCGCag-GCGc -5'
24667 3' -58.7 NC_005264.1 + 25537 0.69 0.712675
Target:  5'- uGCGAUGGGUgccguacgCCCGCGucGCcgccaacgCCGCGg -3'
miRNA:   3'- -CGCUGCUCA--------GGGCGCuuCGca------GGCGC- -5'
24667 3' -58.7 NC_005264.1 + 26294 0.74 0.428539
Target:  5'- cGCGAuCGGcUCCCGCGucuuCGUCCGCGu -3'
miRNA:   3'- -CGCU-GCUcAGGGCGCuuc-GCAGGCGC- -5'
24667 3' -58.7 NC_005264.1 + 27919 0.7 0.615094
Target:  5'- aGCGACGAcgaCCGCGGuguuGGCGuUCUGCGc -3'
miRNA:   3'- -CGCUGCUcagGGCGCU----UCGC-AGGCGC- -5'
24667 3' -58.7 NC_005264.1 + 30399 0.66 0.859713
Target:  5'- gGCGGCG-GUCgCGCGccgguGCGgagagCUGCGg -3'
miRNA:   3'- -CGCUGCuCAGgGCGCuu---CGCa----GGCGC- -5'
24667 3' -58.7 NC_005264.1 + 31589 0.66 0.852258
Target:  5'- uGgGGCGAGUCUgcucucugGCGAGGCGg-CGCGc -3'
miRNA:   3'- -CgCUGCUCAGGg-------CGCUUCGCagGCGC- -5'
24667 3' -58.7 NC_005264.1 + 32375 0.75 0.348432
Target:  5'- cUGGCGAGgaugCCgGCGGccGGCGUCCGCc -3'
miRNA:   3'- cGCUGCUCa---GGgCGCU--UCGCAGGCGc -5'
24667 3' -58.7 NC_005264.1 + 32921 0.66 0.859713
Target:  5'- cGCGcAgGGGU--CGCGggGCG-CCGCGu -3'
miRNA:   3'- -CGC-UgCUCAggGCGCuuCGCaGGCGC- -5'
24667 3' -58.7 NC_005264.1 + 33580 0.66 0.852258
Target:  5'- cGCGucguuCGGGUcaCCCGCGgcGCGUuuGg- -3'
miRNA:   3'- -CGCu----GCUCA--GGGCGCuuCGCAggCgc -5'
24667 3' -58.7 NC_005264.1 + 33855 0.72 0.509167
Target:  5'- cGCGGCaGAG-CUgaagaaCGUGGAGCGUCCGCu -3'
miRNA:   3'- -CGCUG-CUCaGG------GCGCUUCGCAGGCGc -5'
24667 3' -58.7 NC_005264.1 + 34629 0.67 0.786541
Target:  5'- -----aAGgCCCGCGggGUGUUCGCGg -3'
miRNA:   3'- cgcugcUCaGGGCGCuuCGCAGGCGC- -5'
24667 3' -58.7 NC_005264.1 + 36219 0.67 0.803888
Target:  5'- cGCaGACcaGAG-CCCGCGAgguuuaggGGCGgagCCGCa -3'
miRNA:   3'- -CG-CUG--CUCaGGGCGCU--------UCGCa--GGCGc -5'
24667 3' -58.7 NC_005264.1 + 37581 0.72 0.518534
Target:  5'- gGCGGCaAGUCUCGCG--GCGgCCGCGg -3'
miRNA:   3'- -CGCUGcUCAGGGCGCuuCGCaGGCGC- -5'
24667 3' -58.7 NC_005264.1 + 41322 0.66 0.836803
Target:  5'- cGCG-CGAGgCCCGCcgaccaucgucGAAGCaG-CCGCGa -3'
miRNA:   3'- -CGCuGCUCaGGGCG-----------CUUCG-CaGGCGC- -5'
24667 3' -58.7 NC_005264.1 + 42761 0.69 0.703072
Target:  5'- gGC-ACGAcUCCCGCuagccGGCGUCCGCc -3'
miRNA:   3'- -CGcUGCUcAGGGCGcu---UCGCAGGCGc -5'
24667 3' -58.7 NC_005264.1 + 44781 0.66 0.84462
Target:  5'- cGCGGCGAucGUUgCCGaCGccGCGgucgCCGCGg -3'
miRNA:   3'- -CGCUGCU--CAG-GGC-GCuuCGCa---GGCGC- -5'
24667 3' -58.7 NC_005264.1 + 46590 0.66 0.836012
Target:  5'- cGCGuGCGGaggcucuGUCCCuGCGggGCGaggacggcUCCGUGc -3'
miRNA:   3'- -CGC-UGCU-------CAGGG-CGCuuCGC--------AGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.