miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24667 3' -58.7 NC_005264.1 + 161781 0.67 0.81235
Target:  5'- uGCGGCGAGcCuCCGCacgguGGAGCaagaaCCGCGa -3'
miRNA:   3'- -CGCUGCUCaG-GGCG-----CUUCGca---GGCGC- -5'
24667 3' -58.7 NC_005264.1 + 160349 0.66 0.836803
Target:  5'- cGCG-CGAGgCCCGCcgaccaucgucGAAGCaG-CCGCGa -3'
miRNA:   3'- -CGCuGCUCaGGGCG-----------CUUCG-CaGGCGC- -5'
24667 3' -58.7 NC_005264.1 + 156608 0.72 0.518534
Target:  5'- gGCGGCaAGUCUCGCG--GCGgCCGCGg -3'
miRNA:   3'- -CGCUGcUCAGGGCGCuuCGCaGGCGC- -5'
24667 3' -58.7 NC_005264.1 + 155246 0.67 0.803888
Target:  5'- cGCaGACcaGAG-CCCGCGAgguuuaggGGCGgagCCGCa -3'
miRNA:   3'- -CG-CUG--CUCaGGGCGCU--------UCGCa--GGCGc -5'
24667 3' -58.7 NC_005264.1 + 153362 0.66 0.859713
Target:  5'- gGCGGCagacaAGaCgCGCGAAGCGUUgCGCGa -3'
miRNA:   3'- -CGCUGc----UCaGgGCGCUUCGCAG-GCGC- -5'
24667 3' -58.7 NC_005264.1 + 152607 0.66 0.852258
Target:  5'- cGCGucguuCGGGUcaCCCGCGgcGCGUuuGg- -3'
miRNA:   3'- -CGCu----GCUCA--GGGCGCuuCGCAggCgc -5'
24667 3' -58.7 NC_005264.1 + 151861 0.66 0.852258
Target:  5'- gGCGGCGAcaCgUGgGggGCGUCuuCGCGg -3'
miRNA:   3'- -CGCUGCUcaGgGCgCuuCGCAG--GCGC- -5'
24667 3' -58.7 NC_005264.1 + 151402 0.75 0.348432
Target:  5'- cUGGCGAGgaugCCgGCGGccGGCGUCCGCc -3'
miRNA:   3'- cGCUGCUCa---GGgCGCU--UCGCAGGCGc -5'
24667 3' -58.7 NC_005264.1 + 150616 0.66 0.852258
Target:  5'- uGgGGCGAGUCUgcucucugGCGAGGCGg-CGCGc -3'
miRNA:   3'- -CgCUGCUCAGGg-------CGCUUCGCagGCGC- -5'
24667 3' -58.7 NC_005264.1 + 149426 0.66 0.859713
Target:  5'- gGCGGCG-GUCgCGCGccgguGCGgagagCUGCGg -3'
miRNA:   3'- -CGCUGCuCAGgGCGCuu---CGCa----GGCGC- -5'
24667 3' -58.7 NC_005264.1 + 145511 0.66 0.859713
Target:  5'- aGCGGCGAugaugCCUGCGAcauuGGCagGUCuCGCGc -3'
miRNA:   3'- -CGCUGCUca---GGGCGCU----UCG--CAG-GCGC- -5'
24667 3' -58.7 NC_005264.1 + 142571 0.68 0.741074
Target:  5'- cGCaGACG-GUCCCcuccGCGAGGCcgcgCCGCa -3'
miRNA:   3'- -CG-CUGCuCAGGG----CGCUUCGca--GGCGc -5'
24667 3' -58.7 NC_005264.1 + 140680 0.68 0.732627
Target:  5'- uGUGACGuacggCCCGCGGcgcaaucuaaggcgcGCGUCCGCu -3'
miRNA:   3'- -CGCUGCuca--GGGCGCUu--------------CGCAGGCGc -5'
24667 3' -58.7 NC_005264.1 + 133276 0.67 0.820661
Target:  5'- aGCGACGGGgCUgGCGAuaaacaaaagGGCGgugacgCUGCGa -3'
miRNA:   3'- -CGCUGCUCaGGgCGCU----------UCGCa-----GGCGC- -5'
24667 3' -58.7 NC_005264.1 + 132298 0.68 0.768682
Target:  5'- aCGACGAGgguucgcgCCaGCGAGGCGggUCGUGg -3'
miRNA:   3'- cGCUGCUCa-------GGgCGCUUCGCa-GGCGC- -5'
24667 3' -58.7 NC_005264.1 + 131049 0.75 0.355945
Target:  5'- gGCGGCGAccgccgCCCuuagGCGAAGCGcCCGCGa -3'
miRNA:   3'- -CGCUGCUca----GGG----CGCUUCGCaGGCGC- -5'
24667 3' -58.7 NC_005264.1 + 130526 0.69 0.673963
Target:  5'- cCGGCGAGauagaCCugCGCGAAGCGU-CGCGg -3'
miRNA:   3'- cGCUGCUCa----GG--GCGCUUCGCAgGCGC- -5'
24667 3' -58.7 NC_005264.1 + 129869 0.67 0.786541
Target:  5'- uGCG-CGAG-CCCGCGu-GUcUCCGCa -3'
miRNA:   3'- -CGCuGCUCaGGGCGCuuCGcAGGCGc -5'
24667 3' -58.7 NC_005264.1 + 129548 0.71 0.595491
Target:  5'- cCGAgCGGGUCCUGUGcGGCG-CCGCc -3'
miRNA:   3'- cGCU-GCUCAGGGCGCuUCGCaGGCGc -5'
24667 3' -58.7 NC_005264.1 + 127800 0.68 0.749449
Target:  5'- gGCuGACGAcGUCgCGCGAgccaucucccgacAGCGuugccUCCGCGg -3'
miRNA:   3'- -CG-CUGCU-CAGgGCGCU-------------UCGC-----AGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.