Results 1 - 20 of 113 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24667 | 3' | -58.7 | NC_005264.1 | + | 103069 | 1.1 | 0.002046 |
Target: 5'- gGCGACGAGUCCCGCGAAGCGUCCGCGu -3' miRNA: 3'- -CGCUGCUCAGGGCGCUUCGCAGGCGC- -5' |
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24667 | 3' | -58.7 | NC_005264.1 | + | 99881 | 0.69 | 0.683708 |
Target: 5'- -gGGCGAGUCCgGaCGcuaAAGCGUCgaCGCGa -3' miRNA: 3'- cgCUGCUCAGGgC-GC---UUCGCAG--GCGC- -5' |
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24667 | 3' | -58.7 | NC_005264.1 | + | 127329 | 0.69 | 0.693413 |
Target: 5'- gGCGACGGGggcaCCUGCGccGCGgcgUCGCc -3' miRNA: 3'- -CGCUGCUCa---GGGCGCuuCGCa--GGCGc -5' |
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24667 | 3' | -58.7 | NC_005264.1 | + | 124241 | 0.66 | 0.866978 |
Target: 5'- cGCGGCGAG----GCGAAGCucuucuUCCGCGg -3' miRNA: 3'- -CGCUGCUCagggCGCUUCGc-----AGGCGC- -5' |
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24667 | 3' | -58.7 | NC_005264.1 | + | 54353 | 0.74 | 0.411658 |
Target: 5'- aUGGCGAG-CCUuaGAAGCGUCgCGCGg -3' miRNA: 3'- cGCUGCUCaGGGcgCUUCGCAG-GCGC- -5' |
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24667 | 3' | -58.7 | NC_005264.1 | + | 56971 | 0.74 | 0.420047 |
Target: 5'- gGCGACGAGUCCCuCGucGC--CCGCGc -3' miRNA: 3'- -CGCUGCUCAGGGcGCuuCGcaGGCGC- -5' |
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24667 | 3' | -58.7 | NC_005264.1 | + | 156608 | 0.72 | 0.518534 |
Target: 5'- gGCGGCaAGUCUCGCG--GCGgCCGCGg -3' miRNA: 3'- -CGCUGcUCAGGGCGCuuCGCaGGCGC- -5' |
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24667 | 3' | -58.7 | NC_005264.1 | + | 71860 | 0.72 | 0.527968 |
Target: 5'- gGCGGCGGuGUUCCGCGAcggcacgcgGGCGcCCGaCGc -3' miRNA: 3'- -CGCUGCU-CAGGGCGCU---------UCGCaGGC-GC- -5' |
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24667 | 3' | -58.7 | NC_005264.1 | + | 62725 | 0.71 | 0.595491 |
Target: 5'- cGCGACGAuUCCCGCaaccGCGUcgucgcugagccCCGCGg -3' miRNA: 3'- -CGCUGCUcAGGGCGcuu-CGCA------------GGCGC- -5' |
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24667 | 3' | -58.7 | NC_005264.1 | + | 6315 | 0.69 | 0.673963 |
Target: 5'- cGCGGCGAGgcuUCGCGuGGCGUacaCGCa -3' miRNA: 3'- -CGCUGCUCag-GGCGCuUCGCAg--GCGc -5' |
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24667 | 3' | -58.7 | NC_005264.1 | + | 27919 | 0.7 | 0.615094 |
Target: 5'- aGCGACGAcgaCCGCGGuguuGGCGuUCUGCGc -3' miRNA: 3'- -CGCUGCUcagGGCGCU----UCGC-AGGCGC- -5' |
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24667 | 3' | -58.7 | NC_005264.1 | + | 129548 | 0.71 | 0.595491 |
Target: 5'- cCGAgCGGGUCCUGUGcGGCG-CCGCc -3' miRNA: 3'- cGCU-GCUCAGGGCGCuUCGCaGGCGc -5' |
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24667 | 3' | -58.7 | NC_005264.1 | + | 151402 | 0.75 | 0.348432 |
Target: 5'- cUGGCGAGgaugCCgGCGGccGGCGUCCGCc -3' miRNA: 3'- cGCUGCUCa---GGgCGCU--UCGCAGGCGc -5' |
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24667 | 3' | -58.7 | NC_005264.1 | + | 6233 | 0.7 | 0.634744 |
Target: 5'- -aGACGGGUUCUGCG--GCGgccCCGCGg -3' miRNA: 3'- cgCUGCUCAGGGCGCuuCGCa--GGCGC- -5' |
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24667 | 3' | -58.7 | NC_005264.1 | + | 131049 | 0.75 | 0.355945 |
Target: 5'- gGCGGCGAccgccgCCCuuagGCGAAGCGcCCGCGa -3' miRNA: 3'- -CGCUGCUca----GGG----CGCUUCGCaGGCGC- -5' |
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24667 | 3' | -58.7 | NC_005264.1 | + | 120207 | 0.72 | 0.547022 |
Target: 5'- cGCGAUGGGgguaCgcaGCGGaccgGGCGUCCGCGg -3' miRNA: 3'- -CGCUGCUCag--Gg--CGCU----UCGCAGGCGC- -5' |
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24667 | 3' | -58.7 | NC_005264.1 | + | 61491 | 0.7 | 0.664187 |
Target: 5'- cCGACGcGcCCCGCGGucucggcuAGCG-CCGCGc -3' miRNA: 3'- cGCUGCuCaGGGCGCU--------UCGCaGGCGC- -5' |
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24667 | 3' | -58.7 | NC_005264.1 | + | 110823 | 0.69 | 0.683708 |
Target: 5'- aGCGuuCGGGUCUgaGCGggGuCGcUCCGCGc -3' miRNA: 3'- -CGCu-GCUCAGGg-CGCuuC-GC-AGGCGC- -5' |
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24667 | 3' | -58.7 | NC_005264.1 | + | 123515 | 0.74 | 0.398453 |
Target: 5'- cGCG-CGAGggUCGCGAgcggaggggggacugGGCGUCCGCGg -3' miRNA: 3'- -CGCuGCUCagGGCGCU---------------UCGCAGGCGC- -5' |
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24667 | 3' | -58.7 | NC_005264.1 | + | 33855 | 0.72 | 0.509167 |
Target: 5'- cGCGGCaGAG-CUgaagaaCGUGGAGCGUCCGCu -3' miRNA: 3'- -CGCUG-CUCaGG------GCGCUUCGCAGGCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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