miRNA display CGI


Results 21 - 40 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24667 3' -58.7 NC_005264.1 + 25537 0.69 0.712675
Target:  5'- uGCGAUGGGUgccguacgCCCGCGucGCcgccaacgCCGCGg -3'
miRNA:   3'- -CGCUGCUCA--------GGGCGCuuCGca------GGCGC- -5'
24667 3' -58.7 NC_005264.1 + 127329 0.69 0.693413
Target:  5'- gGCGACGGGggcaCCUGCGccGCGgcgUCGCc -3'
miRNA:   3'- -CGCUGCUCa---GGGCGCuuCGCa--GGCGc -5'
24667 3' -58.7 NC_005264.1 + 129548 0.71 0.595491
Target:  5'- cCGAgCGGGUCCUGUGcGGCG-CCGCc -3'
miRNA:   3'- cGCU-GCUCAGGGCGCuUCGCaGGCGc -5'
24667 3' -58.7 NC_005264.1 + 123515 0.74 0.398453
Target:  5'- cGCG-CGAGggUCGCGAgcggaggggggacugGGCGUCCGCGg -3'
miRNA:   3'- -CGCuGCUCagGGCGCU---------------UCGCAGGCGC- -5'
24667 3' -58.7 NC_005264.1 + 155246 0.67 0.803888
Target:  5'- cGCaGACcaGAG-CCCGCGAgguuuaggGGCGgagCCGCa -3'
miRNA:   3'- -CG-CUG--CUCaGGGCGCU--------UCGCa--GGCGc -5'
24667 3' -58.7 NC_005264.1 + 132298 0.68 0.768682
Target:  5'- aCGACGAGgguucgcgCCaGCGAGGCGggUCGUGg -3'
miRNA:   3'- cGCUGCUCa-------GGgCGCUUCGCa-GGCGC- -5'
24667 3' -58.7 NC_005264.1 + 99881 0.69 0.683708
Target:  5'- -gGGCGAGUCCgGaCGcuaAAGCGUCgaCGCGa -3'
miRNA:   3'- cgCUGCUCAGGgC-GC---UUCGCAG--GCGC- -5'
24667 3' -58.7 NC_005264.1 + 131049 0.75 0.355945
Target:  5'- gGCGGCGAccgccgCCCuuagGCGAAGCGcCCGCGa -3'
miRNA:   3'- -CGCUGCUca----GGG----CGCUUCGCaGGCGC- -5'
24667 3' -58.7 NC_005264.1 + 55191 0.68 0.768682
Target:  5'- gGCGGCGA---CCGCGAAaCGUCgGCGc -3'
miRNA:   3'- -CGCUGCUcagGGCGCUUcGCAGgCGC- -5'
24667 3' -58.7 NC_005264.1 + 151402 0.75 0.348432
Target:  5'- cUGGCGAGgaugCCgGCGGccGGCGUCCGCc -3'
miRNA:   3'- cGCUGCUCa---GGgCGCU--UCGCAGGCGc -5'
24667 3' -58.7 NC_005264.1 + 110823 0.69 0.683708
Target:  5'- aGCGuuCGGGUCUgaGCGggGuCGcUCCGCGc -3'
miRNA:   3'- -CGCu-GCUCAGGg-CGCuuC-GC-AGGCGC- -5'
24667 3' -58.7 NC_005264.1 + 5533 0.68 0.750375
Target:  5'- cGCGGCGucUCgCGCGGAGCGgguuucucUUCGCa -3'
miRNA:   3'- -CGCUGCucAGgGCGCUUCGC--------AGGCGc -5'
24667 3' -58.7 NC_005264.1 + 6233 0.7 0.634744
Target:  5'- -aGACGGGUUCUGCG--GCGgccCCGCGg -3'
miRNA:   3'- cgCUGCUCAGGGCGCuuCGCa--GGCGC- -5'
24667 3' -58.7 NC_005264.1 + 62725 0.71 0.595491
Target:  5'- cGCGACGAuUCCCGCaaccGCGUcgucgcugagccCCGCGg -3'
miRNA:   3'- -CGCUGCUcAGGGCGcuu-CGCA------------GGCGC- -5'
24667 3' -58.7 NC_005264.1 + 156608 0.72 0.518534
Target:  5'- gGCGGCaAGUCUCGCG--GCGgCCGCGg -3'
miRNA:   3'- -CGCUGcUCAGGGCGCuuCGCaGGCGC- -5'
24667 3' -58.7 NC_005264.1 + 54353 0.74 0.411658
Target:  5'- aUGGCGAG-CCUuaGAAGCGUCgCGCGg -3'
miRNA:   3'- cGCUGCUCaGGGcgCUUCGCAG-GCGC- -5'
24667 3' -58.7 NC_005264.1 + 124319 0.67 0.820661
Target:  5'- gGCGGCGGcuGaCCCGUGggGCGg--GCGa -3'
miRNA:   3'- -CGCUGCU--CaGGGCGCuuCGCaggCGC- -5'
24667 3' -58.7 NC_005264.1 + 6857 0.67 0.811511
Target:  5'- uUGcCGGGaacuaUCCCGaCGGcagccagAGCGUCCGCGa -3'
miRNA:   3'- cGCuGCUC-----AGGGC-GCU-------UCGCAGGCGC- -5'
24667 3' -58.7 NC_005264.1 + 129869 0.67 0.786541
Target:  5'- uGCG-CGAG-CCCGCGu-GUcUCCGCa -3'
miRNA:   3'- -CGCuGCUCaGGGCGCuuCGcAGGCGc -5'
24667 3' -58.7 NC_005264.1 + 84133 0.67 0.776778
Target:  5'- cGCGgcagcucGCGAGcCCCGgGAAGUGgUCGCa -3'
miRNA:   3'- -CGC-------UGCUCaGGGCgCUUCGCaGGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.